Genome Informatics Vol. 10 (1999)

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Genome Informatics Vol. 10 (1999)

Presented at the Genome Informatics Workshop 1999
December 14-15, 1999, Garden Hall, Yebisu Garden Place, Tokyo, Japan

Published as: Asai, K. and Miyano, S. and Takagi, T. (eds.) "Genome Informatics 1999"
Universal Academy Press, Tokyo, 1999

Preface by Kiyoshi Asai

Program Committee

 


 

Full Talk Papers

 

MIAX: A Novel System for Assessment of Macromolecular Interaction in Condensed Phases.
1) Description of the Interaction Model and Simulation Algorithm

Carlos A. Del Carpio Munoz, Atsushi Yoshimori
Genome Informatics 10: 3-12 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

A Generic Criterion for Gene Recognitions in Genomic Sequences
Chungfan Kim, Akihiko Konagaya, Kiyoshi Asai
Genome Informatics 10: 13-22 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Protein Threading Based on Multiple Protein Structure Alignment
Tatsuya Akutsu, Kim Lan Sim Genome Informatics 10: 23-29 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Predicting Protein Disorder for N-, C-, and Internal Regions
Xiaohong Li, Pedro Romero, Meeta Rani, A. Keith Dunker, Zoran Obradovic
Genome Informatics 10: 30-40 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Predicting Binding Regions within Disordered Proteins
Ethan Garner, Pedro Romero, A. Keith Dunker, Celeste Brown, Zoran Obradovic
Genome Informatics 10: 41-50 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

A Compression Algorithm for DNA Sequences and Its Applications in Genome Comparison
Xin Chen, Sam Kwong, Ming Li
Genome Informatics 10: 51-61 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

An EM-type Algorithm for Ordered Restriction Map Alignment
Hirotada Kobayashi, Hiroshi Imai
Genome Informatics 10: 62-72 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

A Greedy Algorithm for Minimizing the Number of Primers in Multiple PCR Experiments
Koichiro Doi, Hiroshi Imai
Genome Informatics 10: 73-82 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

On the Reconstruction of Ancient Doubled Circular Genomes Using Minimum Reversals
Nadia El-Mabrouk, David Sankoff
Genome Informatics 10: 83-93 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Genome-scale Gene Expression Analysis and Pathway Reconstruction in KEGG
Mitsuteru Nakao, Hidemasa Bono, Shuichi Kawashima, Tomomi Kamiya, Kazushige Sato, Susumu Goto, Minoru Kanehisa
Genome Informatics 10: 94-103 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts
See-Kiong Ng, Marie Wong
Genome Informatics 10: 104-112 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Finding Precursor Compounds in Secondary Metabolism
Masanori Arita, Kiyoshi Asai, Takaaki Nishioka
Genome Informatics 10: 113-120 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Automated Processing of 2-D Gel Electrophoretograms of Genomic DNA for Hunting Pathogenic DNA Molecular Changes
Katsutoshi Takahashi, Masayuki Nakazawa, Yasuo Watanabe, Akihiko Konagaya
Genome Informatics 10: 121-132 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Bio-calculus: Its Concept and Molecular Interaction
Masao Nagasaki, Shuichi Onami, Satoru Miyano, Hiroaki Kitano
Genome Informatics 10: 133-143 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Towards Automatic Construction of Cell-Lineage of C. elegans from Nomarski DIC Microscope Images
Tomohiro Yasuda, Hideo Bannai, Shuichi Onami, Satoru Miyano, Hiroaki Kitano
Genome Informatics 10: 144-154 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Tracing Synergetic Behavior of the QTLs Affecting Oral Glucose Tolerance in the OLETF Rat
Akihiro Nakaya, Haretugu Hishigaki, Shinichi Morishita
Genome Informatics 10: 155-165 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Integrating Application Programs for Bioinformatics Using a Web Browser
Yutaka Ueno, Kiyoshi Asai, Masanori Arita
Genome Informatics 10: 166-175 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Making High-level Queries on Diverse Genome Data: A Structured Genome Document Database System Based on GXML and GQL
Aaron Stokes, Hideo Matsuda, Akihiro Hashimoto
Genome Informatics 10: 176-185 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

A System to Find Genetic Networks Using Weighted Network Model
Tomohiro Moriyama, Ayumi Shinohara, Masayuki Takeda, Osamu Maruyama, Takao Goto, Satoru Miyano, Satoru Kuhara
Genome Informatics 10: 186-195 (1999)
[Abstract]   [Full-text HTML]   [Full-text PDF]

Software Demonstration Abstracts

 

PAPIA (Parallel Protein Information Analysis) System and MolTreC Parallel Molecular Dynamics Simulator Running on a Compact 8-node Linux PC Cluster
Yutaka Akiyama, Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando
Genome Informatics 10: 202-203 (1999)
[Full-text PDF]

Ortholog Identifiers for Integration of Genomic and Pathway Information in KEGG
Susumu Goto, Kotaro Shiraishi, Kayo Okamoto, Hiroko Ishida, Toshi Nakatani, Tomoko Deno, Minoru Kanehisa
Genome Informatics 10: 204-205 (1999)
[Full-text PDF]

A Keyword Recommendation System for GenBank
Yasuhiko Kitamura, Tetsuro Nanbu, Shoji Tatsumi
Genome Informatics 10: 206-207 (1999)
[Full-text PDF]

GeneAlign: Java Application Software for Multiple Sequence Alignment Editor
Ken Kurokawa, Yoshitaka Hasegawa, Kenichi Kawashima, Toshiyuki Okumura, Tatsuya Takagi, Teruo Yasunaga
Genome Informatics 10: 208-209 (1999)
[Full-text PDF]

KMDB: Keio Mutation Database for Human Disease Gene
Shinsei Minoshima, Susumu Mitsuyama, Saho Ohno, Takashi Kawamura, Nobuyoshi Shimizu
Genome Informatics 10: 210-212 (1999)
[Full-text PDF]

NEXTDB: The Expression Pattern Map Database for C. elegans
Tadasu Shin-i, Yuji Kohara
Genome Informatics 10: 213-214 (1999)
[Full-text PDF]

ViewDesigner: A Tool for Designing Viewscopes in Discovery System HypothesisCreator
Yoshinori Tamada, Satoshi Matsumoto, Osamu Maruyama, Satoru Miyano
Genome Informatics 10: 215-216 (1999)
[Full-text PDF]

Protein Dynamics Observations of Lambda Phage by Hybrid Petri Net
Atsushi Doi, Rainer Drath, Masao Nagasaki, Hiroshi Matsuno, Satoru Miyano
Genome Informatics 10: 217-218 (1999)
[Full-text PDF]

An Intelligent Tool for Selecting Abstracts in MEDLINE
Miyako Tanaka, Sanae Nakazono, Hiroshi Matsuno, Satoru Miyano
Genome Informatics 10: 219-220 (1999)
[Full-text PDF]

Poster Abstracts

 

Development of an Efficient Data Processing Method for cDNA Microarray and Its Application to Tissue Expression Profiling
Koji Kadota, Rika Miki, Yasushi Okazaki, Kentaro Shimizu, Yoshihide Hayashizaki
Genome Informatics 10: 221-222 (1999)
[Full-text PDF]

DDGEL/DDCHIP: Web-Based Systems for Analysis of 2-D Gel Electrophoresis Images and DNA Macro/Micro Array Images
Kyotetsu Kanaya, Akira Ohyama, Tatsuya Akutsu, Asao Fujiyama
Genome Informatics 10: 223-224 (1999)
[Full-text PDF]

Probe Design for DNA Chips
Ken-ichi Kurata, Akira Suyama
Genome Informatics 10: 225-226 (1999)
[Full-text PDF]

Discrimination of Drug Sensitivity of Cancer Using cDNA Microarray and Multivariate Statistical Analysis
Tatsuhiko Tsunoda, Yoshiaki Hojo, Chikashi Kihara, Norihiko Shiraishi, Osamu Kitahara, Kenji Ono, Toshihiro Tanaka, Toshihisa Takagi, Yusuke Nakamura
Genome Informatics 10: 227-228 (1999)
[Full-text PDF]

Construction of an Integrated Environment for Sequence, Structure, Property and Function Analysis of Proteins
Jianghong An, Takao Nakama, Yasushi Kubota, Hiroshi Wako, Akinori Sarai
Genome Informatics 10: 229-230 (1999)
[Full-text PDF]

Recent Improvements in the Automatic System for Protein Tertiary Structure Prediction GAX
Carlos Adriel Del Carpio Munoz
Genome Informatics 10: 231-232 (1999)
[Full-text PDF]

Development of an Automated Identification Program for Three-Dimensional Protein Motifs
Hiroaki Kato, Yoshimasa Takahashi, Hidetsugu Abe
Genome Informatics 10: 233-234 (1999)
[Full-text PDF]

Genius: System for Assigning Protein Coding Regions to 3D Structures
Makiko Suwa, Henrik T. Yudate, Yasuhiko Masuho, Asaf A. Salamov, Christine A. Orengo, Mark B. Swindells
Genome Informatics 10: 235-236 (1999)
[Full-text PDF]

A System for Displaying Protein Structure Information Based on Sequence Fragment Similarity
Shouji Tatsumoto, Kenji Satou
Genome Informatics 10: 237-238 (1999)
[Full-text PDF]

An Automated Structure Prediction System by Lattice Model for Seven-Helix-Type Membrane Proteins
Junichi Uechi, Takatsugu Hirokawa, Makiko Suwa, Shigeki Mitaku
Genome Informatics 10: 239-240 (1999)
[Full-text PDF]

BESPA: Software Tools for Three-dimensional Structure Reconstruction from Single Particle Images of Proteins
Yutaka Ueno, Katsutoshi Takahashi, Kiyoshi Asai, Chikara Sato
Genome Informatics 10: 241-242 (1999)
[Full-text PDF]

Chemical Knowledge for Predicting Biosynthetic Pathways of Secondary Metabolites
Takaaki Nishioka, Kimito Funatsu
Genome Informatics 10: 243-244 (1999)
[Full-text PDF]

Prediction of Secondary Metabolism Pathways from Genomic Information and Compounds Data
Atsushi Ogiwara
Genome Informatics 10: 245-246 (1999)
[Full-text PDF]

Methods for Predicting Target Sites of Transcription Factors
Akinori Sarai, Hidetoshi Kono, Michael Gromiha, Fabio Pichierri, Kenji Sayano, Misako Aida
Genome Informatics 10: 247-248 (1999)
[Full-text PDF]

Evaluation of a Method for Predicting Transcription Factors
Goro Terai, Takeshi Mizuno, Toshihisa Takagi
Genome Informatics 10: 249-250 (1999)
[Full-text PDF]

Prediction of Cooperative Binding Sites for Multiple Transcription Factors
Yifei Wang, Akinori Sarai
Genome Informatics 10: 251-252 (1999)
[Full-text PDF]

AIGNET: A System That Infers Large Scale Genetic Networks
Yukihiro Maki, Shoji Watanabe, Yukihiro Eguchi, Daisuke Tominaga, Masahiro Okamoto
Genome Informatics 10: 253-254 (1999)
[Full-text PDF]

Coherent Structural Prediction of a Set of Paralogous Genes on a Eukaryotic Genome
Osamu Gotoh
Genome Informatics 10: 255-256 (1999)
[Full-text PDF]

Interaction-based Analysis of Protein Function and Network
Haretsugu Hishigaki, Toshihide Ono, Akira Tanigami, Toshihisa Takagi
Genome Informatics 10: 257-258 (1999)
[Full-text PDF]

Prediction of MHC Class II-Peptide Interaction Using Fuzzy Neural Network
Hideki Noguchi, Taizo Hanai, Hiroyuki Honda, Takeshi Kobayashi
Genome Informatics 10: 259-260 (1999)
[Full-text PDF]

Prediction of Nuclear Localization Signals by HMM
Keun-Joon Park, Minoru Kanehisa
Genome Informatics 10: 261-262 (1999)
[Full-text PDF]

A Novel System for Assessment of Macromolecular Interaction in Condensed Phases. 2) Interaction Site Inference by Molecular Shape and Electrostatic Complementarity
Atsushi Yoshimori, Carlos Adriel Del Carpio Munoz
Genome Informatics 10: 263-264 (1999)
[Full-text PDF]

Progress of ProTherm: Theromodynamic Database for Proteins and Mutants
Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, P. Prabakaran, Akinori Sarai
Genome Informatics 10: 265-266 (1999)
[Full-text PDF]

Detection of Apoptotic Domains Against KEGG Database by the HMM Search
Masahiro Hattori, Minoru Kanehisa
Genome Informatics 10: 267-268 (1999)
[Full-text PDF]

Maintenance of Transcription Factor DataBase TFDB
Masako Kaizawa, Satoru Watanabe, Takahiro Nobukuni, Masami Horikoshi, Hiroshi Handa, Yoshiyuki Kuchino, Takao Sekiya, Hiroshi Mizushima
Genome Informatics 10: 269-271 (1999)
[Full-text PDF]

A Database System for the Management and Karyotype Analysis of Chromosome Image Data
Akihiro Kawaguchi, Kenji Satou
Genome Informatics 10: 272-273 (1999)
[Full-text PDF]

MAGEST: ESTs and Gene Expression Pattern Database for Halocynthia roretzi Maternal cDNA
Shuichi Kawashima, Takeshi Kawashima, Hiroki Nishida, Kazuhiro W. Makabe, Minoru Kanehisa
Genome Informatics 10: 274-275 (1999)
[Full-text PDF]

INE: The Rice Genome Sequence Database
Yoshiyuki Mukai, Hideki Nagasaki, Baltazar A. Antonio, Katsumi Sakata, Yasumichi Sakai, Takuji Sasaki
Genome Informatics 10: 276-277 (1999)
[Full-text PDF]

Receptor Database (RDB) in 1999
Kotoko Nakata, Takako Takai, Tsuguchika Kaminuma
Genome Informatics 10: 278-279 (1999)
[Full-text PDF]

Thermodynamic Database for Protein-Nucleic Acid Interactions
P. Prabakaran, Jianghong An, Michael Gromiha, S. Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
Genome Informatics 10: 280-281 (1999)
[Full-text PDF]

SLAD - An Integrated Swine MHC Database: A Case Study of Data Warehousing in Molecular Immunology
Christian Schönbach, Vladimir Brusic, Judice L.Y. Koh
Genome Informatics 10: 282-283 (1999)
[Full-text PDF]

PDB-DO: Database of Disorder
Kim Lan Sim, Tomoyuki Uchida, Satoru Miyano
Genome Informatics 10: 284-285 (1999)
[Full-text PDF]

An Aberrant Splicing Database for Finding Rules of Splice-Site Selection
Takashi Yamanaka, Tetsushi Yada, Kenta Nakai
Genome Informatics 10: 286-287 (1999)
[Full-text PDF]

Construction and Application of Mouse Full-length cDNA Database
Hideaki Konno, Yoshifumi Fukunishi, Toshinori Endo, Yoshihide Hayashizaki
Genome Informatics 10: 288-289 (1999)
[Full-text PDF]

Classification of MEDLINE Abstracts
Katsutoshi Ibushi, Nigel Collier, Jun'ichi Tsujii
Genome Informatics 10: 290-291 (1999)
[Full-text PDF]

A Combined Query Expansion Approach for Information Retrieval
Hisao Imai, Nigel Collier, Jun'ichi Tsujii
Genome Informatics 10: 292-293 (1999)
[Full-text PDF]

A Semantically Annotated Corpus from MEDLINE Abstracts
Tomoko Ohta, Yuka Tateisi, Nigel Collier, Chikashi Nobata, Katsutoshi Ibushi, Jun'ichi Tsujii
Genome Informatics 10: 294-295 (1999)
[Full-text PDF]

Automatic Extraction of Information on Protein-Protein Interaction from Scientific Literature
Toshihide Ono, Haretsugu Hishigaki, Akira Tanigami, Toshihisa Takagi
Genome Informatics 10: 296-297 (1999)
[Full-text PDF]

An Ontology for Biological Reaction Events
Yuka Tateisi, Tomoko Ohta, Takako Takai, Jun'ichi Tsujii
Genome Informatics 10: 298-299 (1999)
[Full-text PDF]

An Object-Protocol Model Multidatabase Query System for Rice and Maize
Bal A. Antonio, Zhiwei Fang, Hector Sanchez, Mary Polacco, Su-Shing Chen, Katsumi Sakata, Isamu Ohta, Yoshiyuki Mukai, E. Jr. Coe, Takuji Sasaki
Genome Informatics 10: 300-301 (1999)
[Full-text PDF]

A Preliminary Study in Data Management and Visualization of Signal Transduction Pathway Data -- Viewing Interaction Data
Ken-ichiro Fukuda, Toshihisa Takagi
Genome Informatics 10: 302-303 (1999)
[Full-text PDF]

Toward a Data Mining Service from Large and Heterogeneous Genome Databases in GenomeNet
Yoshiki Fuseda, Kenji Satou
Genome Informatics 10: 304-305 (1999)
[Full-text PDF]

Cross Database Visualization
David P. Hansen, Thure Etzold, Guenther Kurapkat
Genome Informatics 10: 306-307 (1999)
[Full-text PDF]

A Full-Text Search System Covering the Whole GenomeNet
Takao Kataoka, Kenji Satou
Genome Informatics 10: 308-309 (1999)
[Full-text PDF]

WEB Based GENOME Analysis Tools in ALIS Project
Kazuo Takehana, Takehiko Ito, Tetsushi Yada, Mika Hirakawa, Hiroko Yamaguchi, Junko Shimada, Katsuji Matsumura, Masako Kuroda
Genome Informatics 10: 310-311 (1999)
[Full-text PDF]

Global Integration of Gene Databases by Eigen-ID Method
Tetsuro Toyoda, Akiko Itai
Genome Informatics 10: 312-313 (1999)
[Full-text PDF]

Gene Classification Method Based on Batch-Learning SOM
Takashi Abe, Shigehiko Kanaya, Makoto Kinouchi, Yoshihiro Kudo, Hirotada Mori, Hideo Matsuda, Carlos Del Carpio, Toshimichi Ikemura
Genome Informatics 10: 314-315 (1999)
[Full-text PDF]

Synonymous Codon Usage Based on Codon-Anticodon Interaction Energy and Gene Expression Level
Mamoru Kato, Akira Suyama
Genome Informatics 10: 316-317 (1999)
[Full-text PDF]

Analysis of Molecular Evolution in Mitochondorial tRNA Gene Sequences
Jun-Ichi Sagara, Kentaro Shimizu
Genome Informatics 10: 318-319 (1999)
[Full-text PDF]

Unit-Based de novo Drug Design Using a Library of Protein-Ligand Interaction Sites
Kiminobu X. Sato, Susumu Goto, Minoru Kanehisa
Genome Informatics 10: 320-321 (1999)
[Full-text PDF]

Characterization and Classification of Splicing Patterns
Yumi Tamada, Toshio Shimizu
Genome Informatics 10: 322-323 (1999)
[Full-text PDF]

Application to Gene Cluster Analysis of Inductive Inference of Languages over Patterns with Conceptual Hierarchy
Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto
Genome Informatics 10: 324-325 (1999)
[Full-text PDF]

Distribution of Species Specific Gene Family in Microorganisms
Takeshi Ara, Kenji Suzuki, Hideo Matsuda, Hirotada Mori
Genome Informatics 10: 326-327 (1999)
[Full-text PDF]

Differences of Translation Termination Sites Among the Three Stop Codons
Yosuke Ozawa, Satoshi Hanaoka, Rintaro Saito, Masaru Tomita
Genome Informatics 10: 328-329 (1999)
[Full-text PDF]

Fop Values, Start Codons, SD Sequence Conservation, and Their Correlation to Gene Expression Level
Hiroaki Sakai, Chiaki Imamura, Hiroshi Ohno, Takanori Washio, Masaru Tomita
Genome Informatics 10: 330-331 (1999)
[Full-text PDF]

Computational Analysis of c Sequences
Reina Uno, Yoichi Nakayama, Kenji Yotsutani, Takehito Mogami, Kazuharu Arakawa, Masaru Tomita
Genome Informatics 10: 332-333 (1999)
[Full-text PDF]

Zipf-Scaling Description in the DNA Sequences
Yasuo Yonezawa, Hiroyuki Motohasi
Genome Informatics 10: 334-335 (1999)
[Full-text PDF]

Toward Full 3D Structural Investigation of Intron Splicing in Human Cytochrome P450 2D6 pre-mRNA
Wayne Dawson, Kenji Yamamoto
Genome Informatics 10: 336-337 (1999)
[Full-text PDF]

Systematic Analyses on Mouse Encyclopedia
Toshinori Endo, Yoshifumi Fukunishi, Hideaki Konno, Harukazu Suzuki, Yasuhiro Ozawa, Masayasu Yoshino, Kazuhiro Shibata, Masayoshi Itoh, Piero Carninci, Yasushi Okazaki, Yoshihide Hayashizaki
Genome Informatics 10: 338-339 (1999)
[Full-text PDF]

Sequence Analysis for Discrimination of Signal Peptides and Signal Anchor Sequences
Masahiro Gomi, Shigeki Mitaku
Genome Informatics 10: 340-341 (1999)
[Full-text PDF]

Pairwise Alignment on the Loop Structured Computer
Zhongmin Li, Yoshio Yoshioka, Toshio Shimizu
Genome Informatics 10: 342-343 (1999)
[Full-text PDF]

A High-throughput Gene Discovery System for Arabidopsis Genome Sequencing Project
Yasukazu Nakamura, Satoshi Tabata
Genome Informatics 10: 344-345 (1999)
[Full-text PDF]

Insertion with Long Target Duplication: A Novel Mechanism for Bacterial Gene Mobility Suggested from Genome Comparison
Ayaka Nobusato, Ikuo Uchiyama, Seishi Ohashi, Ichizo Kobayashi
Genome Informatics 10: 346-347 (1999)
[Full-text PDF]

Evolutionary Emergence of Early-Peptide-Synthesizing RNA Machines by Means of Hierarchical Sociogenesis of tRNA-Riboorganisms
Koji Ohnishi, Shoken Hokari
Genome Informatics 10: 348-349 (1999)
[Full-text PDF]

Distances between Completely Matched Tuples in the Modern Gene Sequences
Nobuyuki Uchikoga, Akira Suyama
Genome Informatics 10: 350-351 (1999)
[Full-text PDF]

Synthesis and Analysis of a Biological System
Hiroyuki Kurata, Kazunari Taira, Hiroaki Kitano
Genome Informatics 10: 352-353 (1999)
[Full-text PDF]

BIODRIVE: Simulator for Biochemical and Genetic Networks
Koji M. Kyoda, Michiko Muraki, Shugo Hamahashi, Mineo Morohashi, Shuichi Onami, Hiroaki Kitano
Genome Informatics 10: 354-355 (1999)
[Full-text PDF]

Generic Gene Expression System for Modeling Complex Gene Regulation Network Using E-CELL System
Kenta Hashimoto, Fumihiko Miyoshi, Sae Seno, Masaru Tomita
Genome Informatics 10: 356-357 (1999)
[Full-text PDF]

Parameter Estimation Mechanism of E-CELL Simulation Environment
Yusuke Saito, Kouichi Takahashi, Tomoharu Iwata, Tomohiko Aikawa, Masaru Tomita
Genome Informatics 10: 358-359 (1999)
[Full-text PDF]

Pathological Analyses of Enzyme Deficiency in Human Erythrocyte Using E-CELL System
Ryo Matsushima, Yoichi Nakayama, Natsumi Noguchi, Hironori Tanaka, Ayako Kinoshita, Masaru Tomita
Genome Informatics 10: 360-361 (1999)
[Full-text PDF]

Towards Kinetic Modeling of DNA Replication Using the E-CELL System
Fumihiko Miyoshi, Kenta Hashimoto, Yuki Fujita, Reina Matsuo, Youhei Yamada, Masaru Tomita
Genome Informatics 10: 362-363 (1999)
[Full-text PDF]

Computer Simulation of Human Erythrocyte Using the E-CELL System
Yoichi Nakayama, Ryo Matsushima, Masaru Tomita
Genome Informatics 10: 364-365 (1999)
[Full-text PDF]

Mathematical Analysis of Metabolic Networks Using the E-CELL Simulation Environment
Masayuki Okayama, Motohiro Yoneda, Yusuke Saito, Kouichi Takahashi, Masaru Tomita
Genome Informatics 10: 366-367 (1999)
[Full-text PDF]

Kinetic Modelling of Energy Metabolism in Mitochondria
Katsuyuki Yugi, Yuko Kanai, Masaru Tomita
Genome Informatics 10: 368-369 (1999)
[Full-text PDF]

Invited Talks

 

Computational Analysis of High-throughput Genomics Data Using Hidden Markov Models and Support Vector Machines
David Haussler
Genome Informatics 10: 199 (1999)
[Full-text PDF]

Human Genome Analysis and Medicine in the 21st Century
Yusuke Nakamura
Genome Informatics 10: 200-201 (1999)
[Full-text PDF]