Genome Informatics 2006

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Genome Informatics 2006

Presented at the 17th International Conference on Genome Informatics
December 18-20, 2006, Yokohama Pacifico, Japan

Poster and Software Demonstrations

 


 

  • Software Demonstration Abstracts
  • Poster Abstracts
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    Software Demonstration Abstracts

    Mass Spectral Database for Metabolome Analysis
    Hisayuki Horai, Kazuhiro Suwa, Masanori Arita, Yoshito Nihei, Takaaki Nishioka
    GIW 2006 Poster Abstract: S01 [PDF file]

    CADLIVE: Integration for Large-Scale Network Data
    Yuki Shimokawa, Kazuhiro Maeda, Kentaro Inoue, Hiroyuki Kurata
    GIW 2006 Poster Abstract: S02 [PDF file]

    RIKEN Natural Products Depository (RIKEN NPDepo)
    Hideaki Konno, Takeshi Tomiki, Tomio Saito, Masashi Ueki, Takeo Asaoka, Ryuichiro Suzuki, Masakazu Uramoto, Hideaki Kakeya, Hiroyuki Osada
    GIW 2006 Poster Abstract: S03 [PDF file]

    PreSPI: Prediction System for Protein Interaction
    Woo-Hyuk Jang, Choon-Oh Lee, Dong-Soo Han
    GIW 2006 Poster Abstract: S04 [PDF file]

    Construction of Candida Albicans Protein Network from Yeast Protein Interactions in System Biology
    Chung-Yen Lin,Chieh-Hwa Lin,Chi-Shiang Cho,Fan-Kai Lin,Shu-Hwa Chen,Chao A. Hsiung
    GIW 2006 Poster Abstract: S05 [PDF file]

    ExPlain: Causal Analysis of Gene Expression Data from Promoter Models to Signaling Pathways
    Alexander Kel, Holger Karas, Nico Voss, Tagir Waleev, Edgar Wingender
    GIW 2006 Poster Abstract: S06 [PDF file]

    Cell Illustrator3.0: A Platform for Biopathway Modeling and Simulation
    Masao Nagasaki, Atsushi Doi, Ayumu Saito, Emi Ikeda, Kazuko Ueno, Euna Jeong, ChristopherJ. Savoie, Satoru Miyano
    GIW 2006 Poster Abstract: S07 [PDF file]

    Ajax for Networks and Ontologies
    Kinya Okada, Takahisa Furukawa, Kiyoshi Asai
    GIW 2006 Poster Abstract: S08 [PDF file]

    Poster Abstracts

    Serial Regulation on Cell Cycle System in S.cerevisiae
    Sachiyo Aburatani, Katsuhisa Horimoto
    GIW 2006 Poster Abstract: P001 [PDF file]

    Efficient Inferring Method for Extracting Reliable Interactions from Time Series of Gene Expression Profile
    Masahiko Nakatsui, Takanori Ueda, Maki Yukihiro, Isao Ono, Masahiro Okamoto
    GIW 2006 Poster Abstract: P002 [PDF file]

    Emerging Needs for Restructuring Biomedical Knowledge and Education System
    Tsuguchika Kaminuma, Masumi Yukawa, Yoshitomo Tanaka, Takako Takai-Igarashi, Yoshihiro Takemoto, Hiroshi Tanaka
    GIW 2006 Poster Abstract: P003 [PDF file]

    Relation between Cell Division and Gene Expression by Using Single Cell Tracking System
    Kazumi Hakamada, Satoshi Fujita, Jun Miyake
    GIW 2006 Poster Abstract: P004 [PDF file]

    Identification of Apoptosis-Induced Gene Networks from Time Course Expression Profiles with Replicated Measurements
    Osamu Hirose, Ryo Yoshida, Seiya Imoto, Satoru Miyano
    GIW 2006 Poster Abstract: P005 [PDF file]

    p53 Pathways to Simulate the p53 Transcriptional Activity
    Atsushi Doi, Masao Nagasaki, Kazuko Ueno, Hiroshi Matsuno, Satoru Miyano
    GIW 2006 Poster Abstract: P006 [PDF file]

    An S-System Application for Mammalian Circadian Clock System
    Daisuke Tominaga, Katsuhisa Horimoto
    GIW 2006 Poster Abstract: P007 [PDF file]

    Noise-Induced Robust Synchronization in a Multicellular System
    Ruiqi Wang, Luonan Chen, Kazuyuki Aihara
    GIW 2006 Poster Abstract: P008 [PDF file]

    Mathematical Modeling of G1/S Phase in the Cell Cycle with Involving the p53/Mdm2 Network
    Kazunari Iwamoto, Yoshihiko Tashima, Hiroyuki Hamada, Yukihiro Eguchi, Masahiro Okamoto
    GIW 2006 Poster Abstract: P009 [PDF file]

    Sensitivity Analysis for the E.coli Nitrogen Assimilation System
    Koichi Masaki, Hiroyuki Kurata
    GIW 2006 Poster Abstract: P010 [PDF file]

    Analysis for the Conflict between G2/M Phase Arrest in the Cell Cycle and Apoptosis Induction
    Yoshihiko Tashima, Yu Kisaka, Hiroyuki Hamada, Taizo Hanai, Yukihiro Eguchi, Masahiro Okamoto
    GIW 2006 Poster Abstract: P011 [PDF file]

    Spatio-Temporal Dynamics of Molecules on the Cell Surface Studied by Particle Simulation
    Ryuzo Azuma, Hiroshi Kobayashi, Tomoyuki Yamamoto, Akihiko Konagaya
    GIW 2006 Poster Abstract: P012 [PDF file]

    Consistency of the Transition Theory in Computer Simulation of a Genetic Toggle Switch
    Tomohiro Ushikubo, Masaki Sasai
    GIW 2006 Poster Abstract: P013 [PDF file]

    Regulation of Metabolic Networks By Small Molecule Metabolites
    Alex Gutteridge, Minoru Kanehisa, Susumu Goto
    GIW 2006 Poster Abstract: P014 [PDF file]

    The Finitely Numerable Effect in the Coupled Molecular Motor Model
    Kazunari Mouri, Tetsuya Shimokawa
    GIW 2006 Poster Abstract: P015 [PDF file]

    A Steady-State Approximation-Based Solver for Stiff Biochemical Models
    Emi Shiraishi, Hiroyuki Kurata
    GIW 2006 Poster Abstract: P016 [PDF file]

    Genomic Data Assimilation for a Hybrid Functional Petri Net Model of Circadian Rhythm with Time Course Gene Expression Data
    Masao Nagasaki, Rui Yamaguchi, Ryo Yoshida, Seiya Imoto, Atsushi Doi, Yoshinori Tamada, Hiroshi Matsuno, Satoru Miyano, Tomoyuki Higuchi
    GIW 2006 Poster Abstract: P017 [PDF file]

    Cell Fate Simulation of ASE Cell in eCaenorhabditis elegans Using Hybrid Functional Petri Net with Extension
    Ayumu Saito, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano
    GIW 2006 Poster Abstract: P018 [PDF file]

    A Cluster Identification Method without Using a Threshold of Correlation Coefficient in Hierarchical Cluster Analysis
    Yuki Miyata, Yoichi Yamada, Ken-ichiro Muramoto
    GIW 2006 Poster Abstract: P019 [PDF file]

    Cluster Analysis of Transcription Factor Binding Sites in the Promoter Regions of Cardiac Genes in Failing Hearts
    Masaharu Nakayama, Hiroko Tada, Yasuhide Asaumi, Hiroaki Shimokawa
    GIW 2006 Poster Abstract: P020 [PDF file]

    Module Discovery in Gene Expression Data Using Closed Itemset Mining Algorithm
    Yoshifumi Okada, Wataru Fujibuchi, Paul Horton
    GIW 2006 Poster Abstract: P021 [PDF file]

    A Gene Clustering Method Using Gene Expression Data and Gene Networks
    Motoki Shiga, Ichigaku Takigawa, Hiroshi Mamitsuka
    GIW 2006 Poster Abstract: P022 [PDF file]

    Applying Gaussian Distribution-Dependent Criteria to Decision Trees for High-Dimensional Microarray Data
    Raymond Wan, Ichigaku Takigawa, Hiroshi Mamitsuka
    GIW 2006 Poster Abstract: P023 [PDF file]

    Computational Analysis of Global Expression Profiles in Mouse Natural Antisense Transcripts
    Yuki Okada, Koji Numata, Rintaro Saito, Hidenori Kiyosawa, Akio Kanai, Masaru Tomita
    GIW 2006 Poster Abstract: P024 [PDF file]

    Quantitative Control of Early Transcription by ERK and Akt Signal Transduction
    Takashi Nakakuki, Kaori Ide, Takeshi Nagashima, Kaoru Takahashi, Noriko Yumoto, Mariko Hatakeyama
    GIW 2006 Poster Abstract: P025 [PDF file]

    Prediction of Ligand- and ErbB Receptor-Specific Transcription Factors from Time-Course Gene Expression Data of Cancer Cells
    Takeshi Nagashima, Jun Horiuchi, Kenji Nakano, Kaori Ide, Kaoru Takahashi, Mariko Hatakeyama
    GIW 2006 Poster Abstract: P026 [PDF file]

    Modeling of Extracellular Matrix Degradation Processes in Cancer Metastasis Using Covariance Structure Analysis
    Akiko Hatano, Kaoru Mogushi, Hiroshi Tanaka
    GIW 2006 Poster Abstract: P027 [PDF file]

    Gene Expression Profiling of Hepatocellular Carcinoma Using Independent Component Analysis
    Satoshi Nagaie, Kaoru Mogushi, Hiroshi Tanaka
    GIW 2006 Poster Abstract: P028 [PDF file]

    ROKU: An Improved Method for the Detection of Tissue-Specific Expression Patterns
    Koji Kadota, Jiazhen Ye, Yuji Nakai, Tohru Terada, Kentaro Shimizu
    GIW 2006 Poster Abstract: P029 [PDF file]

    Identification of Tissue Specific Transcription Factors Using Microarray Gene Expression Data
    Larisa Kiseleva, Ekaterina Shelest, Edgar Wingender, Paul Horton
    GIW 2006 Poster Abstract: P030 [PDF file]

    Profiling Prostate Cancer Signatures by Statistical Analysis of mRNA Isoform Expression
    T.Murlidharan Nair, Hai-Ri Li, Xiang-Dong Fu
    GIW 2006 Poster Abstract: P031 [PDF file]

    A Comparative Study of Exploratory Analysis versus Statistical Analysis for Oligo-DNA Microarrays
    Kenichiro Kanda, Kaoru Azumi, Nori Satoh, Sorin V. Sabau
    GIW 2006 Poster Abstract: P032 [PDF file]

    Genome-Wide Detection of Human Copy Number Variations Using High-Density DNA Oligonucleotide Arrays
    Daisuke Komura, Shumpei Ishikawa, Fan Shen, Kunihiro Nishimura, Sigeo Ihara, Hiroshi Nakamura, Keith W. Jones, Jing Huang, Hiroyuki Aburatani
    GIW 2006 Poster Abstract: P033 [PDF file]

    Experimental Design for Time-Series Microarray Analysis
    Ryosuke Ito, Hiroki Takahashi, Taku Oshima, Naotake Ogasawara, Md. Altaf-Ul-Amin, Ken Kurokawa, Shigehiko Kanaya
    GIW 2006 Poster Abstract: P034 [PDF file]

    New Gene Filtering Method Using S2N' Based on the Concept of PART Filtering Method
    Hiro Takahashi, Hiroyuki Honda
    GIW 2006 Poster Abstract: P035 [PDF file]

    Gene Alignment for Cell Division Cycle Microarray Experiments without Sinusoidal Fittings
    Y-h. Taguchi
    GIW 2006 Poster Abstract: P036 [PDF file]

    Power Spectra of Bird-Influenza A Virus (BIV) H5N1 ssRNA Base Sequences : Possibility of Cooperative Genes or Interferences
    Eisei Takushi, Hiroyuki Sakamoto, Mitsuhiro Seino
    GIW 2006 Poster Abstract: P037 [PDF file]

    Gene Finding for Microbial Metagenomics
    Jungho Park, Hideki Noguchi, Toshihisa Takagi
    GIW 2006 Poster Abstract: P038 [PDF file]

    Conservation of Regulation Systems in Firmicutes
    Nicolas Sierro, Kenta Nakai
    GIW 2006 Poster Abstract: P039 [PDF file]

    Comprehensive Detection of Terminal Oligo-Pyrimidine (TOP)Genes in the Human Genome
    Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Sumio Sugano, Kenta Nakai
    GIW 2006 Poster Abstract: P040 [PDF file]

    Autoimmune Diseases and Evolutionary Trace of the T-Cell Epitopes
    Wataru Honda, Shuichi Kawashima, Minoru Kanehisa
    GIW 2006 Poster Abstract: P041 [PDF file]

    Analysis of Tissue Specific Expression Patterns of Isozymes
    Masataka Takarabe, Akira Tsuchida, Masashi Fujita, Shujiro Okuda, Akiyasu C. Yoshizawa, Takuji Yamada, Masumi Itoh, Susumu Goto, Minoru Kanehisa
    GIW 2006 Poster Abstract: P042 [PDF file]

    A Web Application for Identification of Glycosaminoglycan (GAG) Binding Motifs in Plasmodium Falciparum
    Nelson Hayes, Johan Normark, Daniel Nilsson, Craig Wheelock, Mats Wahlgren, Susumu Goto
    GIW 2006 Poster Abstract: P043 [PDF file]

    Analysis of the Sub-Telomeric Region of the Malaria Parasite P. Falciparum Using aCGH Data
    Diego Diez, Ulf Ribacke, Craig Wheelock, Mats Wahlgren, Susumu Goto
    GIW 2006 Poster Abstract: P044 [PDF file]

    Proteins with Charge Periodicity of 28 Residues in Amino Acid Sequences from Total Genomes
    Runcong Ke, Shigeki Mitaku
    GIW 2006 Poster Abstract: P045 [PDF file]

    Characteristic Distribution of GC Contents for Proteins with Charge Periodicity of 28 Residues
    Ryusuke Sawada, Runcong Ke, Noriyuki Sakiyama, Shigeki Mitaku
    GIW 2006 Poster Abstract: P046 [PDF file]

    Analysis and Estimation for the Substituted Sequences of DNA Sequences for Saccharomyces Cerevisiae with a Kind of Marcov Model
    Mitsuhiro Seino, Hiroyuki Sakamoto
    GIW 2006 Poster Abstract: P047 [PDF file]

    Stochastic Local Genome Alignment and Comprehensive Search for Conserved Gene Clusters
    Tsuyoshi Hachiya, Yasubumi Sakakibara
    GIW 2006 Poster Abstract: P048 [PDF file]

    Computational Analysis of Human mRNAs Regulated by GRSF-1, a Positive Regulator of Influenza Virus
    Hikaru Taniguchi, Kosuke Fujishima, Yuka Watanabe, Yuko Osada, Masaru Tomita, Rintaro Saito, Akio Kanai
    GIW 2006 Poster Abstract: P049 [PDF file]

    Significant Deviation in the Configuration of Tandem Repeats in Prokaryotic Genomes
    Shintaro Hirayama, Satoshi Mizuta
    GIW 2006 Poster Abstract: P050 [PDF file]

    RNA Base Pairing Probability Alignment by Genetic Algorithm
    Akito Taneda
    GIW 2006 Poster Abstract: P051 [PDF file]

    Detailed Analysis of Reentrant Loops and Neighboring Sites in Alpha-Helical Transmembrane Proteins
    Kinya Matsushiro, Wataru Nakahata, Satoshi Mizuta
    GIW 2006 Poster Abstract: P052 [PDF file]

    Distribution of Relative Mutation Frequency
    Hyunchul Kim, Masaru Tomita
    GIW 2006 Poster Abstract: P053 [PDF file]

    MotifCombinator: A Web Tool to Search for Combinations of Cis-Regulatory Motifs
    Mamoru Kato, Tatsuhiko Tsunoda
    GIW 2006 Poster Abstract: P054 [PDF file]

    Frame-Cluster Mapping: Genomewide Analysis for Detection of Localized Signal Regions
    Kou Amano, Hidemitsu Nakamura, Hisataka Numa, Yosiaki Nagamura, Hiroaki Ichikawa, Kaoru Fukami-Kobayashi
    GIW 2006 Poster Abstract: P055 [PDF file]

    Analysis of Aspergillus oryzae tRNA Genes Using Multivariate Analysis
    Jun-Ichi Sagara
    GIW 2006 Poster Abstract: P056 [PDF file]

    Analysis of Amino Acid Sequence by Self Organization Maps
    Takeshi Takahashi, Hiroshi Dozono
    GIW 2006 Poster Abstract: P057 [PDF file]

    Prediction of Transcription Factor Binding Sites in Saccharomyces cerevisiae
    Takuya Ueno, Hidetoshi Kono, Sarai Akinori
    GIW 2006 Poster Abstract: P058 [PDF file]

    Structural Breakpoint Prediction and its Application Based on Dimers in Amino Acid Sequence
    Yoshihide Makino, Nobuya Itoh
    GIW 2006 Poster Abstract: P059 [PDF file]

    Ab-initio Identification of Promoter Elements in Antimicrobial Peptide-Coding Genes
    Manisha Brahmachary, Christian Schönbach, Liang Yang, Enli Huang, Sin Lam Tan, Rajesh Chowdhary, S.P.T Krishnan, Chin-Yo Lin, David A Hume, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Vladimir B Bajic
    GIW 2006 Poster Abstract: P060 [PDF file]

    Structural Analysis on Functional Epitope
    Jian Huang, Minoru Kanehisa
    GIW 2006 Poster Abstract: P061 [PDF file]

    A GP Based Algorithm for HP-Model Problem
    Takahiro Yabuki, Hitoshi Iba
    GIW 2006 Poster Abstract: P062 [PDF file]

    Combining Molecular Dynamics Simulation with a Graph Theoretical Approach to Study Protein Complex Flexibility
    AbdulRajjak Shaikh, Mohamed Ismael, Pei Qiang, Hideyuki Tsuboi,Michihisa Koyama, Nozomu Hatakeyama, Akira Endou, Hiromitsu Takaba,Momoji Kubo, Eiichiro Ichiishi, Carlos A. Del Carpio, Akira Miyamoto
    GIW 2006 Poster Abstract: P063 [PDF file]

    Inferring Domain Combination Pattern and its Biological Meaning via Association Rules
    Suk-hoon Jung, Dong-soo Han, Sung-doke Lee
    GIW 2006 Poster Abstract: P064 [PDF file]

    A Novel Method to Determine the Assembling Space between Two Protein Subunits
    Miki Maeda, Hiroya Nobori
    GIW 2006 Poster Abstract: P065 [PDF file]

    Biomolecular Computations toward Enzyme-Catalyzed Transformations of Non-Natural Organic Compounds: Ab initio Fragment Molecular Orbital Calculations
    Takahisa Tanaka, Takatomo Kimura, Yoichiro Yagi, Yoshinobu Naoshima
    GIW 2006 Poster Abstract: P066 [PDF file]

    Can Brownian Dynamics be a Useful Tool for Structure-Based Drug Design?
    Akifumi Oda, Hisao Matsuzaki, Noriyuki Yamaotsu, Shuichi Hirono
    GIW 2006 Poster Abstract: P067 [PDF file]

    A Benchmark Study of the “Soft Docking” Module of MIAX,Using a Set of Unbound Proteins
    Pei Qiang, Mohamed Ismael, Abdul Rajjak Shaikh, Hideyuki Tsuboi, Michihisa Koyama, Nozomu Hatakeyama, Akira Endou, Hiromitsu Takaba, Momoji Kubo, Eiichiro Ichiishi, Carlos A. Del Carpio, Akira Miyamoto
    GIW 2006 Poster Abstract: P068 [PDF file]

    Supervised Consensus Scoring Methods for Structure-Based Drug Design
    Reiji Teramoto, Hiroaki Fukunishi
    GIW 2006 Poster Abstract: P069 [PDF file]

    Scoring Analysis of DNA Binding Sites of DNA Binding Proteins
    Reika Okihara, Yukako Sakatsuji, Ayumi Suzuki, Ichiro Yamato, Satoru Miyazaki
    GIW 2006 Poster Abstract: P070 [PDF file]

    Classification of Protein-DNA Complexes Based on Structural Descriptiors
    Ponraj Prabakaran, Shandar Ahmad, M.Michael Gromiha, Maria G. Singarayan, Akinori Sarai
    GIW 2006 Poster Abstract: P071 [PDF file]

    Comparative Analysis of Amino Acid Residues and Structures between RNase HII and Argonaute Proteins from Pyrococcus furiosus
    Sayaka Kitamura, Kosuke Fujishima, Asako Sato, Arun Krishnan, Masaru Tomita, Akio Kanai
    GIW 2006 Poster Abstract: P072 [PDF file]

    Murlet: A Practical Multiple Alignment Tool for Structural RNA Sequences
    Hisanori Kiryu, Yasuo Tabei, Taishin Kin, Kiyoshi Asai
    GIW 2006 Poster Abstract: P073 [PDF file]

    fRNAdb: A Platform for Mining/Annotating Functional RNA Candidates from Non-Coding RNA Sequences
    Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Takashi Komori, Kiyoshi Asai
    GIW 2006 Poster Abstract: P074 [PDF file]

    RNAmine: Frequent Stem Pattern Miner from RNAs
    Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
    GIW 2006 Poster Abstract: P075 [PDF file]

    An Evolving Zipper Automaton for RNA Secondary Structure Prediction: Improvement by Sequence Homology Inclusion
    Carlos A. Del Carpio M., Mohamed Ismael, Eiichiro Ichiishi, Hideyuki Tsuboi, Michihisa Koyama, Nozomu Hatakeyama, Akira Endou, Hiromitsu Takaba, Momoji Kubo, Akira Miyamoto
    GIW 2006 Poster Abstract: P076 [PDF file]

    Comprehensive Analysis of miRNA Effect to the Transcripts
    Keishin Nishida, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    GIW 2006 Poster Abstract: P077 [PDF file]

    Multiple Alignment of RNAs by Maximizing the Sum of the Matching Probability of Stem Fragments
    Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
    GIW 2006 Poster Abstract: P078 [PDF file]

    Phylogenetic Analysis of Essential Genes by Using ORI-GENE
    Hirotoshi Kawano, Hideaki Mizuno, Akinori Sarai
    GIW 2006 Poster Abstract: P079 [PDF file]

    Evidence for ‘Introns-Late’ from Intron Phase Distribution
    Hung Dinh Nguyen, Maki Yoshihama, Naoya Kenmochi
    GIW 2006 Poster Abstract: P080 [PDF file]

    Algebraic Evolution of the Genetic Code
    Takashi Kawamura
    GIW 2006 Poster Abstract: P081 [PDF file]

    Distance Structure of Homologous Gene Cluster in Cyanobacteria
    Naobumi Sasaki, Naoki Sato
    GIW 2006 Poster Abstract: P082 [PDF file]

    Tracing Back Xenobiotic Responsive and NR Mediated Pathways/Networks
    Yoshitomo Tanaka, Masumi Yukawa, Hiroshi Tanaka, Tsuguchika Kaminuma
    GIW 2006 Poster Abstract: P083 [PDF file]

    Analyses of the Nutrient Dependency of Parasites to Hosts Using KEGG Database
    Ai Muto, Masahiro Hattori, Wataru Honda, Minoru Kanehisa
    GIW 2006 Poster Abstract: P084 [PDF file]

    Identification of Novel Types of Prokaryotic Retroelements Based on Gene Neighborhood and Protein Architecture
    Kenji K. Kojima, Minoru Kanehisa
    GIW 2006 Poster Abstract: P085 [PDF file]

    Comprehensive Analysis of Domain Architectures of Transmembrane Proteins
    Syuuichi Yoshida, Yoshihiro Yamazaki, Takuhiro Nishio, Sunao Kaneko, Toshio Shimizu
    GIW 2006 Poster Abstract: P086 [PDF file]

    Gene Expression Profile Analysis for Circadian Promoter Activities of Cyanobacterial Bioluminescent Reporter Strains Using Non-Metric Multidimensional Scaling
    Tokitaka Oyama, Hiroshi Ito, Takao Kondo, Y-h. Taguchi
    GIW 2006 Poster Abstract: P087 [PDF file]

    Comparative Sequence Analysis between Human and Mouse: Promoter Conservation and Protein Conservation
    Hirokazu Chiba, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    GIW 2006 Poster Abstract: P088 [PDF file]

    Whole-Genome Functional Linkage Network Construction in the Domain Level by Probabilistic Model
    Yong Wang, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
    GIW 2006 Poster Abstract: P089 [PDF file]

    Systematic Analysis of Functional SNP with Type 2 Diabetes Mellitus (T2DM) in the Korean Population
    Hyo-Jeong Ban, Keun-Joon Park, Ji-Hong Kim, Hyun-Woo Han
    GIW 2006 Poster Abstract: P090 [PDF file]

    Analysis of Disease-Associated Mutations and SNP in Relationship with Protein Structure
    Taku Ashikari, Hidetoshi Kono, Akinori Sarai
    GIW 2006 Poster Abstract: P091 [PDF file]

    Adaptive Threshold for Detecting Significant Fold Changes in Microarray Data
    Hidenori Inaoka, Yutaka Fukuoka
    GIW 2006 Poster Abstract: P092 [PDF file]

    Precise Correlation between MLV Integration Sites and Transcription Start Sites in the Human Genome
    Yoshiaki Tanaka, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    GIW 2006 Poster Abstract: P093 [PDF file]

    Hierarchical Bayes Approach to Array CGH Data Normalization
    Shigeyuki Oba, Shin Ishii
    GIW 2006 Poster Abstract: P094 [PDF file]

    Development of a Platform for Functional Genomics under the Generation Challenge Programme (GCP)
    Masaru Takeya, Kohji Suzuki, Koji Doi, Shoshi Kikuchi, Richard Bruskiewich
    GIW 2006 Poster Abstract: P095 [PDF file]

    Annotating Genes with Labelled and Unlabelled Data
    Xing-Ming Zhao, Luonan Chen, Kazuyuki Aihara
    GIW 2006 Poster Abstract: P096 [PDF file]

    Developing SVM Classifier for GPI-(Like)-Anchored Proteins Prediction
    Wei Cao, Shugo Nakamura, Kentaro Shimizu
    GIW 2006 Poster Abstract: P097 [PDF file]

    Enrichment of Protein Utilization in Protein-Protein Interaction Prediction by Adjusting e-value of InterProScan and Using Gene Ontology
    Woo-Hyuk Jang, Hee-Young Hur, Dong-Soo Han
    GIW 2006 Poster Abstract: P098 [PDF file]

    An Approach to Identify Unknown Gene Function through Higher Order Correlations for Gene Clusters
    Akira Funae, Daisuke Komura, Hiroshi Nakamura, Sigeo Ihara
    GIW 2006 Poster Abstract: P099 [PDF file]

    Proposal of Graphic Assessment Method of Attribute Significance for Comprehensive Combination Analysis
    Masahiro Nakatochi, Hiroyuki Honda
    GIW 2006 Poster Abstract: P100 [PDF file]

    Predicting Types of Protein-Protein Interactions Using Various Multiple-Instance Learning Algorithms
    Hiroshi Yamakawa, Koji Maruhashi, Yoshio Nakao
    GIW 2006 Poster Abstract: P101 [PDF file]

    Relationship between Data Size and Accuracy of Prediction of Protein-Protein Interactions by Co-Evolutionary Information
    Tetsuya Sato, Yoshihiro Yamanishi, Hisako Ichihara, Kei-ichi Kuma, Minoru Kanehisa, Hiroyuki Toh
    GIW 2006 Poster Abstract: P102 [PDF file]

    Prediction Accuracy Evaluation of Domain and Domain Combination Based Prediction Methods for Protein-Protein Interaction
    Dong-Soo Han, Woo-Hyuk Jang
    GIW 2006 Poster Abstract: P103 [PDF file]

    Protein Feature Prediction Using Chi-Square in PPI Networks
    YongHo Lee, JaeHun Choi, JongMin Park, SunLee Bang, SooJun Park
    GIW 2006 Poster Abstract: P104 [PDF file]

    Predicting Ligand Binding Sites of Uncharacterized Protein
    Mizuki Morita, Shugo Nakamura, Kentaro Shimizu
    GIW 2006 Poster Abstract: P105 [PDF file]

    Explore MicroRNA Precursors through a High-Throughput Computational Prediction
    Yu-Ching Chang, Shih-Je Lan, Yu-Yu Lin, Cheng-Tao Wu
    GIW 2006 Poster Abstract: P106 [PDF file]

    Comparison of the Prediction Abilities of FBA, MOMA and ROOM for a pykF Mutant of E. coli
    Quanyu Zhao, Hiroyuki Kurata
    GIW 2006 Poster Abstract: P107 [PDF file]

    DNA Repair Recognition via Support Vector Machines
    J.B. Brown, Tatsuya Akutsu
    GIW 2006 Poster Abstract: P108 [PDF file]

    Discrimination of β-Barrel Membrane Proteins Using Machine Learning Techniques
    M.Michael Gromiha, Makiko Suwa
    GIW 2006 Poster Abstract: P109 [PDF file]

    Prediction of Protein-Protein Interaction Sites with Two-Stage Support Vector Machine
    Masanori Kakuta, Kentaro Shimizu
    GIW 2006 Poster Abstract: P110 [PDF file]

    Prediction of Mucin-Type O-Glycosylation by Layered Neural Networks and Support Vector Machines
    Ikue Nouno, Hirotaka Sakamoto, Takeshi Iritani, Kazutoshi Sakakibara, Ikuko Nishikawa, Masahiro Ito
    GIW 2006 Poster Abstract: P111 [PDF file]

    Computational Prediction of Drosophila MicroRNA Targets and Analysis of their Negative Feedback Control
    Yuka Watanabe, Nozomu Yachie, Masaru Tomita, Akio Kanai
    GIW 2006 Poster Abstract: P112 [PDF file]

    Detection of Transcription Units Based on Integration of Non-Targeted Analyses
    Hirokazu Kobayashi, Yoshiaki Kiura, Kazuo Kobayashi, Md. Altaf-Ul-Amin, Naotake Ogasawara, Shigehiko Kanaya, Ken Kurokawa
    GIW 2006 Poster Abstract: P113 [PDF file]

    Prediction of Glycosphingolipid Chemical Structure from MALDI-TOF MS Data
    Yuki Matsumuro, Saki Itonori, Mutsumi Sugita, Masahiro Ito
    GIW 2006 Poster Abstract: P114 [PDF file]

    An Expectation-Maximization Algorithm for Reconstructing Heterogeneous Gene-Content Evolution
    Wataru Iwasaki, Toshihisa Takagi
    GIW 2006 Poster Abstract: P115 [PDF file]

    From Function Prediction to Pathway Prediction: A New Pipeline Based on KAAS and GENIES
    Yuki Moriya, Yoshihiro Yamanishi, Masumi Itoh, Shinobu Okamoto, Minoru Kanehisa
    GIW 2006 Poster Abstract: P116 [PDF file]

    Proposal of PART (Projective Adaptive Resonance Theory) for Analysis of Gene Expression Data with Small Samples
    Takashi Kawamura, Hiro Takahashi, Hiroyuki Honda
    GIW 2006 Poster Abstract: P117 [PDF file]

    Prediction of Glycan Structures from Gene Expression Data Based on Improved Scoring Scheme
    Akitsugu Suga, Yoshihiro Yamanishi, Kosuke Hashimoto, Minoru Kanehisa
    GIW 2006 Poster Abstract: P118 [PDF file]

    Integrative Estimation of Gene Regulatory Network by Means of AdaBoost
    Shinya Nabatame, Hitoshi Iba
    GIW 2006 Poster Abstract: P119 [PDF file]

    Analysis and Discrimination of Ligand Binding Membrane Proteins Using a Simple Statistical Approach
    M.Xavier Suresh, M.Michael Gromiha, Makiko Suwa
    GIW 2006 Poster Abstract: P120 [PDF file]

    Prediction of Protein Subcellular Localization Using an Artificial Neural Network
    Anton Kratz, Rintaro Saito, Arun Krishnan, Masaru Tomita
    GIW 2006 Poster Abstract: P121 [PDF file]

    A Statistical Framework for Genome Wide Discovery of Biomarker Splice Variations with GeneChip Human Exon 1.0 ST Arrays
    Ryo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano
    GIW 2006 Poster Abstract: P122 [PDF file]

    A Calibration Technique for Single-Dimensional Distribution of Local GC Content
    Tomoyuki Fujimoto, Tadao Sugiura, Takeshi Nagaya, Tetsuo Sato, Kotaro Minato
    GIW 2006 Poster Abstract: P123 [PDF file]

    Nonmetric Distances for Barcode of Life
    Hisamitsu Akiba, Y-h. Taguchi
    GIW 2006 Poster Abstract: P124 [PDF file]

    modEst: A GMOD-Based Framework for Integrating Partial Polyploid Transcripts into Closely-Related Genomes
    Aaron Chuah, Richard Bartfai, Laszlo Orban, Alan Christoffels
    GIW 2006 Poster Abstract: P125 [PDF file]

    In Silico Functional Profiling of Small Molecules for Assessing their Physiological Effects
    Tomohiro Sato, Yo Matsuo, Shigeyuki Yokoyama
    GIW 2006 Poster Abstract: P126 [PDF file]

    Probabilistic Ranking for Analyzing Transcriptional Response Variations of Metabolic Gene Paths
    Ichigaku Takigawa, Hiroshi Mamitsuka
    GIW 2006 Poster Abstract: P127 [PDF file]

    Interpreting Patterns of Gene Expression with spherical Self-Organizing Maps (sSOM): Application to Search for Cell Surface Markers
    Tuoya, Yuh Sugii, Tadahiro Nagaoka, Takayuki Fukuda, Hiroko Tada, Hidenori Yamada, Yasaburo Matsuura, Heizo Tokutaka, Masaharu Seno
    GIW 2006 Poster Abstract: P128 [PDF file]

    Gene Subset Selection for Kernel-Based Classifiers
    Satoshi Niijima, Satoru Kuhara
    GIW 2006 Poster Abstract: P129 [PDF file]

    Improvement of a Gene Network Discovery Method via Frequent Subtree Mining
    Alexandre Termier, Yoshinori Tamada, Kazuyuki Numata, Seiya Imoto, Takashi Washio, Tomoyuki Higuchi
    GIW 2006 Poster Abstract: P130 [PDF file]

    A Graph Mining Approach to Gene Network Motif Extraction
    Kazuyuki Numata, Alexandre Termier, Ryo Yoshida, Seiya Imoto, Yoshinori Tamada, Tomoyuki Higuchi, Satoru Miyano
    GIW 2006 Poster Abstract: P131 [PDF file]

    Considering False Negatives in Mixture Oncogenetic Trees Model for Chromosomal Alteration Data
    Kosei Yamoto, Shigeyuki Oba, Shin Ishii
    GIW 2006 Poster Abstract: P132 [PDF file]

    A Novel Clustering Method for Analysis of Biological Networks Using Maximal Components of Graphs
    Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi
    GIW 2006 Poster Abstract: P133 [PDF file]

    Extending Multivariate Bernoulli and Multinomial Models for Clustering MEDLINE Records
    Shanfeng Zhu, Ichigaku Takigawa, Shuqin Zhang, Hiroshi Mamitsuka
    GIW 2006 Poster Abstract: P134 [PDF file]

    A Recommendation System of PubMed Articles Based on Content-Based Filtering
    Takashi Yoneya, Hiroshi Mamitsuka
    GIW 2006 Poster Abstract: P135 [PDF file]

    Automated Genome Annotation and Analysis of Eukaryotes
    Igor Grigoriev, Andrea Aerts, Alan Kuo, Robert Otillar, Asaf Salamov, Astrid Terry, Kemin Zhou, Kelly Felkins, Jinal Jhavery, Wayne Huang, Lukasz Szajkowski, Gregory Werner
    GIW 2006 Poster Abstract: P136 [PDF file]

    A Resolution of the Problem of Multiple Inheritance in Gene Ontology
    Takako Takai-Igarashi, Hiroshi Tanaka
    GIW 2006 Poster Abstract: P137 [PDF file]

    A Gene Annotation Tool Based on Sequence Similarity and Biomedical Text
    Daisuke Yamaguchi, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi
    GIW 2006 Poster Abstract: P138 [PDF file]

    Classification of Figures in Biomedical Literature toward a Figure Finding System
    Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi
    GIW 2006 Poster Abstract: P139 [PDF file]

    A Biomedical Text Mining System from PubMed Abstracts and Patents
    Jaesoo Lim, Hyunchul Jang, Joon-Ho Lim, Soo-Jun Park
    GIW 2006 Poster Abstract: P140 [PDF file]

    Ontology-Based Representation for Cell Systems Markup Language
    Euna Jeong, Masao Nagasaki, Ayumu Saito, Satoru Miyano
    GIW 2006 Poster Abstract: P141 [PDF file]

    A New Grid Layout Algorithm with Swap Operation that Extends the Search Space while Keeping the Time Complexity
    Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano
    GIW 2006 Poster Abstract: P142 [PDF file]

    A Visualization Method for Detecting Pathway Alteration among Subtypes of Lung Carcinoma
    Makoto Kano, Shumpei Ishikawa, Michitaka Hirose, Hiroyuki Aburatani
    GIW 2006 Poster Abstract: P143 [PDF file]

    eXpanda: An Integrated Platform for Network Analysis and Visualization
    Yoshiteru Negishi, Hiroyuki Nakamura, Nozomu Yachie, Rintaro Saito, Masaru Tomita
    GIW 2006 Poster Abstract: P144 [PDF file]

    Pathway Mapping Web-Service Based on KEGG and SVG
    Nobuaki Kono, Kazuharu Arakawa, Masaru Tomita
    GIW 2006 Poster Abstract: P145 [PDF file]

    Visualization of Metabolic Networks as Networks of Atoms by Pajek: An Application of Connectivity Matrix Method
    Jun Ohta
    GIW 2006 Poster Abstract: P146 [PDF file]

    A Hub-Seeded Multilevel Algorithm for Fast Layout of Protein-Protein Interaction Networks
    SunLee Bang, JaeHun Choi, JongMin Park, SooJun Park
    GIW 2006 Poster Abstract: P147 [PDF file]

    Analyzing and Visualizing Complex Metabolite Profiles with MathDAMP
    Richard Baran, Hayataro Kochi, Natsumi Saito, Makoto Suematsu, Tomoyoshi Soga, Takaaki Nishioka, Martin Robert, Masaru Tomita
    GIW 2006 Poster Abstract: P148 [PDF file]

    Correlation Analysis of Sequence and Activity Based on Translation Signal Database, TRSIG
    Takahiro Ishimoto, Alex V. Kochetov, Akinori Sarai
    GIW 2006 Poster Abstract: P149 [PDF file]

    New Features of MutationView : A Module to Search for Disease-Causing Genes from Protein Functional Domain
    Masafumi Ohtsubo, Takashi Kawamura, Susumu Mitsuyama, Nobuyoshi Shimizu, Shinsei Minoshima
    GIW 2006 Poster Abstract: P150 [PDF file]

    Construction of Biomolecular Network in Structurome and Analysis of Cooperativity
    Mitsunobu Sekitou, Akinori Sarai
    GIW 2006 Poster Abstract: P151 [PDF file]

    INOH Pathway Data Ontologies
    Noriko Sakai, Satoko Yamamoto, Hiromi Nakamura, Yukiko Nakanishi, Toshihisa Takagi, KenIchiro Fukuda
    GIW 2006 Poster Abstract: P152 [PDF file]

    Application of AI-Based Database Methods in Purification of Traditional Chinese Pharmacy Recipes
    Yini Cui
    GIW 2006 Poster Abstract: P153 [PDF file]

    Restauro-G: A Rapid Genome Re-Annotation System
    Satoshi Tamaki, Kazuharu Arakawa, Nobuaki Kono, Masaru Tomita
    GIW 2006 Poster Abstract: P154 [PDF file]

    A Web-Based Resource for Glycome Informatics
    Kiyoko F. Aoki-Kinoshita, Masao Ichikawa, Shuichi Ikeda, Kouichi Yamada, Takako Yamaguchi
    GIW 2006 Poster Abstract: P155 [PDF file]

    Gclust Server: Phylogenetic Profiling with Pre-Defined Organism Sets
    Naoki Sato
    GIW 2006 Poster Abstract: P156 [PDF file]

    TACT: Transcriptome Auto-Annotation Conducting Tool of H-InvDB
    Chisato Yamasaki, Hiroaki Kawashima, Fusano Todokoro, Yasuhiro Imamizu, Makoto Ogawa, Motohiko Tanino, Takeshi Itoh, Takashi Gojobori, Tadashi Imanishi
    GIW 2006 Poster Abstract: P157 [PDF file]