Fourth International Workshop on Bioinformatics and Systems Biology

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Fourth International Workshop on Bioinformatics and Systems Biology

May 31 - June 3, 2004, the Palulu Plaza, Kyoto, Japan

 


 

KEGG PEPTIDE: A Database for Peptide Structures
Michihiro Araki, Toshiaki Katayama, Yuriko Matsuura, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 1-2 [PDF file]

A Mathematical Model of the JAK/Stat1 Signal Transduction Pathway
Stephan Beirer, Thomas Meyer, Uwe Vinkemeyer, Thomas Hofer
IBSB 2004 Poster Abstracts: 3-4 [PDF file]

Period distributions of intracellular Ca2+ oscillations
Martin Falcke
IBSB 2004 Poster Abstracts: 5-6 [PDF file]

Protein Sequence-Structure Alignment Using 3D-HMM
Masashi Fujita, Hiroyuki Toh, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 7-8 [PDF file]

Modeling Approaches in Lipid Metabolism
Katrin Hafez, Jens-Georg Reich
IBSB 2004 Poster Abstracts: 9-10 [PDF file]

Minimal Sets of External Compounds in Metabolic Networks
Thomas Handorf, Oliver Ebenhöh
IBSB 2004 Poster Abstracts: 11-12 [PDF file]

Predicting Transcription Factor Binding Sites Using a Bayesian Allocation Method
Dustin T. Holloway, Charles DeLisi
IBSB 2004 Poster Abstracts: 13-15 [PDF file]

Peptide variation governing identity of organisms
Wataru Honda, Shuichi Kawashima, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 16-17 [PDF file]

Comparative genome analysis of glycan transporters
Yoshinobu Igarashi, Shin Kawano, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 18-19 [PDF file]

Genomic analysis of regulatory regions in organelle DNA
Ruy Jauregui Sandoval, Masumi Itoh, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 20-21 [PDF file]

Prediction of Glycan Structures from the Glycan Related Microarray Expression Profiles
Shin Kawano, Yasushi Okuno, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 22-23 [PDF file]

A Maximum Edge-weight Clique Finding Algorithmic Approach for Solving Protein Side-chain Positioning Problem
Dukka Bahadur K.C., Etsuji Tomita, Suzuki Junichi, Tatsuya Akutsu
IBSB 2004 Poster Abstracts: 24-25 [PDF file]

Comparative Analysis of Transcriptional Regulation in Eukaryotic Cell Cycles
Koji Ota, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 26-27 [PDF file]

Zipf Law and Distribution of Paralog Families
Lev B. Levitin, Dmitriy Leyfer
IBSB 2004 Poster Abstracts: 28-29 [PDF file]

Reconstruction of metabolic pathways for malaria parasite Plasmodium falciparum
Vachiranee Limviphuvadh, Masahiro Hattori, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 30-31 [PDF file]

Successful lateral transfer requires codon usage compatibility between foreign genes and recipient genomes
Arturo Medrano-Soto, Gabriel Moreno-Hagelsieb, Pablo Vinuesa, J. Andres Christen, Julio Collado-Vides
IBSB 2004 Poster Abstracts: 32-33 [PDF file]

Study on the Clustering Coefficients in Metabolic Network Using a Hierarchical Framework
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu
IBSB 2004 Poster Abstracts: 34-35 [PDF file]

Application of oligomer interface prediction method in Class A G-protein coupled receptors
Wataru Nemoto, Hiroyuki Toh
IBSB 2004 Poster Abstracts: 36-37 [PDF file]

Genome-wide distribution of bilin-binding GAF domains
Shinobu Okamoto, Masayuki Ohmori, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 38-39 [PDF file]

Integration of Biological Features of Multiple Genomes - The Construction of “Genome Indices” database -
Shujiro Okuda, Akiyasu C. Yoshizawa, Yuki Moriya, Masumi Itoh, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 40-41 [PDF file]

Modeling Biological Activities of Chemical Compounds: Kernel Methods for Structure Activity Relationship
Jean-Luc Perret, Yoshinobu Igarashi, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 42-43 [PDF file]

Determining an Optimal Scoring Function for Protein Complex Predictions
Brian G Pierce, Zhiping Weng
IBSB 2004 Poster Abstracts: 44-45 [PDF file]

Determination of Force Field Parameters for the Octahedral Iron Complex in Lipoxygenase
Jan Saam, Hermann Georg Holzhütter
IBSB 2004 Poster Abstracts: 46-47 [PDF file]

Finding Characteristic Sequence Patterns for Alternative Splicing in Human Genomic DNA
Hiroki Sakai, Osamu Maruyama, Hiroo Murakami, Nobuyoshi Sugaya, Akira Imaizumi, Makihiko Sato, Sachiyo Aburatani, Katsuhisa Horimoto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 48-49 [PDF file]

Decoding of calcium oscillations by phosphorylation cycles
Carlos Salazar, Antonio Politi, Thomas Höfer
IBSB 2004 Poster Abstracts: 50-51 [PDF file]

Enhancing gapless threading
Tobias Schmidt-Goenner, Ernst Walter Knapp
IBSB 2004 Poster Abstracts: 52-53 [PDF file]

Stochastic Modelling of Influenza Virus Fusion
Susanne Schreiber, Kai Ludwig, Herman-Georg Holzhütter, Andreas Herrmann
IBSB 2004 Poster Abstracts: 54-56 [PDF file]

Glycolytic oscillations in spatially ordered interacting cells
Jana Schütze, Reinhart Heinrich
IBSB 2004 Poster Abstracts: 57-58 [PDF file]

Combining kinetics and network-based pathway analysis
Jean-Marc Schwartz, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 59-60 [PDF file]

Bifurcation Analysis of Regulatory Modules in Cell Biology
Maciej Swat, Alexander Kel, Wojciech Swat, Hanspeter Herzel
IBSB 2004 Poster Abstracts: 61-62 [PDF file]

Application of Standard Gibbs Free Energy Changes of Reactions to metabolic pathway computation
Michihiro Tanaka, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 63-64 [PDF file]

ChemRuby: An open source library for integrating bioinformatics and cheminformatics
Nobuya Tanaka, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 65-66 [PDF file]

A New Probabilistic Model for Glycans
Nobuhisa Ueda, Kiyoko F. Aoki, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka
IBSB 2004 Poster Abstracts: 67-68 [PDF file]

Interspike Interval Distribution: a Sensitive Instrument for Diagnostic of Neuronal Dynamics
Tatiana Verechtchaguina, Lutz Schimansky-Geier, Igor M. Sokolov
IBSB 2004 Poster Abstracts: 69-70 [PDF file]

Physiological Characteristics of Nestin-Positive Progenitor Cells in Adult Mouse Hippocampus
Li-Ping Wang, Gerd Kempermann, Helmut Kettenmann
IBSB 2004 Poster Abstracts: 71-72 [PDF file]

Identification of Correlating Conserved Regions on HIV Proteins by Mutation Analysis
Yaoyu E. Wang, Charles DeLisi
IBSB 2004 Poster Abstracts: 73-74 [PDF file]

Prediction of protein network and functions for yeast using multiple types of genomic data
Yoshihiro Yamanishi, Tetsuya Sato, Jean-Phillipe Vert, Susumu Goto, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 75-76 [PDF file]

Prediction and Comparison of Coiled-Coil Proteins in Multiple Genomes
Akiyasu C. Yoshizawa, Shujiro Okuda, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Minoru Kanehisa
IBSB 2004 Poster Abstracts: 77-78 [PDF file]

Enzyme-malfunctioning in the light of pathway analysis An example from nucleotide metabolism
Ionela Zevedei-Oancea
IBSB 2004 Poster Abstracts: 79-80 [PDF file]