Genome Informatics Vol. 2 (1991)

Presented at the Genome Informatics Workshop 1991
December 9-10, 1991, Tokyo, Japan

Published as: S. Mitaku, O. Gotoh, K. Nitta, A. Konagaya, A. Yonezawa(eds.) "Genome Informatics Workshop 1991"


Oral Session

Wide-area Network 'GenomeNet' and Distributed Genetic Information Processing
Atsushi Ogiwara, Minoru Kanehisa
Genome Informatics 2: 20-23 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

gsh(Genomic Shell) Extensible and Flexible UNIX Environment for Genomic Information Analysis
Akira Suyama, Hiroaki Kaku, Ichiro Higuchi
Genome Informatics 2: 24-27 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

A Text Database Management System SIGMA and Its Applications to Analyzing Genetic Information
Takeshi Shinohara, Setsuo Arikawa, Satoru Kuhara, Tetsuhiro Miyahara, Hitoshi Inoue, Ayumi Shinohara, Tomoyuki Uchida
Genome Informatics 2: 28-32 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Utilization of a Sorter of Profile-Type for Human Genome Analysis
Yoshio Noguchi
Genome Informatics 2: 33-36 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Identification of DNA Sequence Motifs in Escherichia coli Genome
Takashi Kunisawa, Masahiko Nakamura
Genome Informatics 2: 37-40 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Cyclic Set-Based Analytic Technique to Find Specific Origomers Which Characterize a Region in Genome: Application to Hypervariable Regions of HIV-1 Genome
Hirohumi Doi
Genome Informatics 2: 41-44 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Development of Overlapping Oligonucleotide Database and Its Application to Searching Signal Sequences over Human Genome
Norihiro Sakamoto, Toshihisa Takagi, Kenji Satou, Yoshiyuki Sakaki
Genome Informatics 2: 45-48 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Pattern Landscapes over DNA sequence(s). Lexical Analysis of DNA Sequence Composition: a Computational Method and Application to "Consensus" Pattern Search in Multiple Sequences
Christophe Lefevre, Joh-E Ikeda
Genome Informatics 2: 49-52 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Statistical Mechanical and Theromdynamic Approaches to Extracting Patterns from Large and Complex Data Sets
James B.Cole
Genome Informatics 2: 53-53 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Fragment Peptide Library (FRAP) and Analysis of Motifs
Y. Seto, M. Isoyama, Y. Ikeuti, K. Nishikawa, Y. Kawakita, M. Kanehisa
Genome Informatics 2: 54-57 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Automatic Construcution of a Dictionary of Sequence Motifs that Characterize Groups of Similar Proteins
Atsushi Ogiwara, Ikuo Uchiyama, Minoru Kanehisa
Genome Informatics 2: 58-61 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Machine Discovery of a Negative Motif
Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Ayumi Shinohara, Takeshi Shinohara
Genome Informatics 2: 62-65 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Stochastic Motif: Current Status and Issues
Akihiko Konagaya
Genome Informatics 2: 66-69 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Protein Motif Extraction on Multi PSI
Satoshi Oyanagi, Koichi Yamagishi, Akihiko Konagaya
Genome Informatics 2: 70-73 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

ODEN - A Computer System for Molecular Evolutionary Analysis and Database Search of DNA and Amino Acid Sequences
Yasuo Ina, Takashi Gojobori
Genome Informatics 2: 74-77 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Classification of GenBank Genomic Data
Akio Nishikawa, Norihiro Sakamoto, Yoshiyuki Sakaki, Toshihisa Takagi, Kazuo Ushijima
Genome Informatics 2: 78-81 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Character Representation of Phylogenetic Trees for Biomolecular Sequences
Koji Tajima
Genome Informatics 2: 82-85 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Construction of Human Gene Mapping Library System on X-window
Shinsei Minoshima, Hiroshi Dohi, Mitsuru Ishizuka, Nobuyoshi Shimizu
Genome Informatics 2: 86-89 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Towards An Analysis of Mutants Spectra on the Sequence Space, I. Some Visual Representations
Yuzuru Husimi
Genome Informatics 2: 90-93 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

On the Statistical Stability of the Nucleic Acids Molecule for the Small Changes in the Sequence
Youhei Fujitani, Kenji Yamamoto
Genome Informatics 2: 94-97 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

A Quantitative Theory of the Cell Proliferation and a BASIC Program Accommodating the Cell Cycle
Erik A. Cerven
Genome Informatics 2: 98-99 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Quantification Analysis and Backward Elimination of 5'-Splice Signals of mRNA Precursors. Relative Importance of Nucleotide Positions
Yoichi Iida, Masatoshi Uchida
Genome Informatics 2: 100-103 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Computer Analysis and Recognition of Human Splice Sites
N.A. Kolchanov, I.B. Rogozin, A.E. Kel, M.P. Ponomarenko, J. Lihachov, L. Milanesi
Genome Informatics 2: 104-107 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Codon-Database and Intron-Database; Discriminant Analysis to Assign Protein-Coding Regions Using the Databases
Toshimichi Ikemura, Ken-ichi Matsumoto, Fumie Ishibashi, Yoshiko Wada, Ken-nosuke Wada
Genome Informatics 2: 108-111 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Multiple Alignment by Parallel Simulated Annealing
Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, Atushi Ogiwara, Minoru Kanehisa
Genome Informatics 2: 112-115 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Local Multiple Alignment by Consensus Matrix
N. Alexandrov, N. Go
Genome Informatics 2: 116-119 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Multiple Alignment System for Protein Sequences Employing 3-Dimensional Dynamic Programming
Makoto Hirosawa, Masaki Hoshida, Masato Ishikawa, Tomoyuki Toya
Genome Informatics 2: 120-123 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

A Quick Algorithm for RNA Secondary Structure Prediction Using A Hopfield Neural Network
Yutaka Akiyama
Genome Informatics 2: 124-127 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

On the mRNA Secondary Structure of Cytochrome P450 Gene Family
Eiji Arakawa, Hiroshi Yoshikura, Kenji Yamamoto
Genome Informatics 2: 128-131 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Construction and Application of Enzyme-Reaction Database
Mikita Suyama, Atsushi Ogiwara, Takaaki Nishioka, Jun'ichi Oda
Genome Informatics 2: 132-135 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Construction of Integrated Relational Database for Protein
M. Isoyama, Y. Ikeuti, Y. Seto
Genome Informatics 2: 136-139 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Prediction of Protein Secondary Structure by the Neural Network
Fumiyoshi Sasagawa, Koji Tajima
Genome Informatics 2: 140-143 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Genetic Information Processing by Stochastic Model - HMM for Secondary Structure Prediction of Protein -
Kiyoshi Asai, Satoru Hayamizu, Kenichi Handa
Genome Informatics 2: 144-147 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Description of Protein Structures in a Logic Programing Language
Tosiyuki Noguti
Genome Informatics 2: 148-149 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Common Spatial Arrangements of Backbone Fragments in Proteins
Nickolai N. Alexandrov, Katsutoshi Takahashi, Nobuhiro Go
Genome Informatics 2: 150-153 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

An Approach to Systematic Detection of Protein Structural Motifs
Yo Matsuo, Minoru Kanehisa
Genome Informatics 2: 154-157 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Prediction of the 3-Dimensional Structure of Proteins by Annealing Simulations
K. Tabuchi, T. Karasawa, J. Izumisawa, T. Yasukawa
Genome Informatics 2: 158-161 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

A Deductive Database System PACADE for the Protein Structure Analysis
Satoru Kuhara, Kenji Sato, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi
Genome Informatics 2: 162-165 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Computer System for Membrane Protein Structure Prediction (MEPSS)
Shigeki Mitaku, Nobuhiko Saito
Genome Informatics 2: 166-169 (1991)
[Abstract]  [Full-text HTML]   [Full-text PDF]

Invited Lectures

The Marriage of Artificial Intelligence and Molecular Biology: More Progress through Mutual Love and Cooperation
Patrick Winston

Artificial Intelligence ---State of the Art and Its Application
Setsuo Ohsuga

Human Genome Analysis and Informatics
Kenichi Matsubara

Preparing for Serendipity: Sharing Information in the New Biology
David J. Lipman