Genome Informatics Vol. 19 (2007)

Presented at the 18th International Conference on Genome Informatics
December 3-5, 2007, Biopolis, Singapore

Published as: S.-K. Ng, H. Mamitsuka, L. Wong
"Genome Informatics Vol. 19"
Imperial College Press, London

Preface by See-Kiong Ng, Hiroshi Mamitsuka and Limsoon Wong

Program Committee


  • Papers
  • Keynote Addresses

  • Papers

    Detection of Monosaccharide Types from Coordinates
    Masanori Arita, Toshiaki Tokimatsu
    Genome Informatics 19: 3-14 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Mining Super-Secondary Structure Motifs from 3D Protein Structures: A Sequence Order Independent Approach
    Zeyar Aung, Jinyan Li
    Genome Informatics 19: 15-26 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    FragQA: Predicting Local Fragment Quality of a Sequence-Structure Alignment
    Xin Gao, Dongbo Bu, Shuai Cheng Li, Jinbo Xu, Ming Li
    Genome Informatics 19: 27-39 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Predicting B Cell Epitope Residues with Network Topology Based Amino Acid Indices
    Jian Huang, Wataru Honda, Minoru Kanehisa
    Genome Informatics 19: 40-49 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Comparative Pair-wise Domain-Combinations for Screening the Clade Specific Domain-architectures in Metazoan Genomes
    Shuichi Kawashima, Takeshi Kawashima, Nicholas H Putnam, Daniel S Rokhsar, Hiroshi Wada, Minoru Kanehisa
    Genome Informatics 19: 50-60 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]   [Supplementary Data]

    A Conservative Parametric Approach to Motif Significance Analysis
    Uri Keich, Patrick Ng
    Genome Informatics 19: 61-72 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Recognition of Polyadenylation Sites from Arabidopsis Genomic Sequences
    Chuan Hock Koh, Limsoon Wong
    Genome Informatics 19: 73-82 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Computational Analysis and Modeling of Genome-Scale Avidity Distribution of Transcription Factor Binding Sites in ChIP-PET Experiments
    Vladimir A. Kuznetsov, Yuriy L. Orlov, Chia Lin Wei, Yijun Ruan
    Genome Informatics 19: 83-94 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Linear-Time Reconstruction of Zero-Recombinant Mendelian Inheritance on Pedigrees without Mating Loops
    Lan Liu, Tao Jiang
    Genome Informatics 19: 95-106 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Computed Protonation Properties: Unique Capabilities for Protein Functional Site Prediction
    Leonel F. Murga, Ying Wei, Mary Jo Ondrechen
    Genome Informatics 19: 107-118 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    An Accurate and Efficient Algorithm for Peptide and PTM Identification by Tandem Mass Spectrometry
    Kang Ning, Hoong Kee Ng, Hon Wai Leong
    Genome Informatics 19: 119-130 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    The Comparative Genomics of Protein Interactions
    José M. Peregrín-Alvarez, Christos A. Ouzounis
    Genome Informatics 19: 131-141 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Weighted Lasso in Graphical Gaussian Modeling for Large Gene Network Estimation Based on Microarray Data
    Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, Satoru Miyano
    Genome Informatics 19: 142-153 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    GO Based Tissue Specific Functions of Mouse using Countable Gene Expression Profiles
    Yoichi Takenaka, Akiko Matsumoto, Hideo Matsuda
    Genome Informatics 19: 154-165 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Functional Centrality: Detecting Lethality of Proteins in Protein Interaction Networks
    Kar Leong Tew, Xiao-Li Li, Soon-Heng Tan
    Genome Informatics 19: 166-177 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    The in silico Prediction of Promoters in Bacterial Genomes
    Michael Towsey, James M. Hogan, Sarah Mathews, Peter Timms
    Genome Informatics 19: 178-189 (2007)
    [Abstract]   [Full-text HTML]   [Full-text PDF]

    Keynote Addresses

    Discovering Biomolecular Mechanisms with Protein Sequence Studies
    Frank Eisenhaber
    Genome Informatics 19: 193-193 (2007)
    [Full-text HTML]   [Full-text PDF]

    The p53 Pathway
    David Lane
    Genome Informatics 19: 194-194 (2007)
    [Full-text HTML]   [Full-text PDF]

    Regulation of Gene Expression by Small Non-Coding RNAs
    Hanah Margalit
    Genome Informatics 19: 195-195 (2007)
    [Full-text HTML]   [Full-text PDF]

    Mapping the Transcriptional Network in Stem Cells Regulated by REST
    Lawrence W. Stanton
    Genome Informatics 19: 196-196 (2007)
    [Full-text HTML]   [Full-text PDF]

    Computational Dissection of Mammalian Regulation Networks
    MichaeL Zhang
    Genome Informatics 19: 197-197 (2007)
    [Full-text HTML]   [Full-text PDF]