Genome Informatics Vol. 19 (2007) Presented at the 18th International Conference on Genome Informatics December 3-5, 2007, Biopolis, Singapore Published as: S.-K. Ng, H. Mamitsuka, L. Wong "Genome Informatics Vol. 19" Imperial College Press, London Preface by See-Kiong Ng, Hiroshi Mamitsuka and Limsoon Wong Program Committee

Papers

Detection of Monosaccharide Types from Coordinates
Masanori Arita, Toshiaki Tokimatsu
Genome Informatics 19: 3-14 (2007)
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Mining Super-Secondary Structure Motifs from 3D Protein Structures: A Sequence Order Independent Approach
Zeyar Aung, Jinyan Li
Genome Informatics 19: 15-26 (2007)
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FragQA: Predicting Local Fragment Quality of a Sequence-Structure Alignment
Xin Gao, Dongbo Bu, Shuai Cheng Li, Jinbo Xu, Ming Li
Genome Informatics 19: 27-39 (2007)
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Predicting B Cell Epitope Residues with Network Topology Based Amino Acid Indices
Jian Huang, Wataru Honda, Minoru Kanehisa
Genome Informatics 19: 40-49 (2007)
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Comparative Pair-wise Domain-Combinations for Screening the Clade Specific Domain-architectures in Metazoan Genomes
Shuichi Kawashima, Takeshi Kawashima, Nicholas H Putnam, Daniel S Rokhsar, Hiroshi Wada, Minoru Kanehisa
Genome Informatics 19: 50-60 (2007)
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A Conservative Parametric Approach to Motif Significance Analysis
Uri Keich, Patrick Ng
Genome Informatics 19: 61-72 (2007)
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Recognition of Polyadenylation Sites from Arabidopsis Genomic Sequences
Chuan Hock Koh, Limsoon Wong
Genome Informatics 19: 73-82 (2007)
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Computational Analysis and Modeling of Genome-Scale Avidity Distribution of Transcription Factor Binding Sites in ChIP-PET Experiments
Vladimir A. Kuznetsov, Yuriy L. Orlov, Chia Lin Wei, Yijun Ruan
Genome Informatics 19: 83-94 (2007)
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Linear-Time Reconstruction of Zero-Recombinant Mendelian Inheritance on Pedigrees without Mating Loops
Lan Liu, Tao Jiang
Genome Informatics 19: 95-106 (2007)
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Computed Protonation Properties: Unique Capabilities for Protein Functional Site Prediction
Leonel F. Murga, Ying Wei, Mary Jo Ondrechen
Genome Informatics 19: 107-118 (2007)
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An Accurate and Efficient Algorithm for Peptide and PTM Identification by Tandem Mass Spectrometry
Kang Ning, Hoong Kee Ng, Hon Wai Leong
Genome Informatics 19: 119-130 (2007)
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The Comparative Genomics of Protein Interactions
José M. Peregrín-Alvarez, Christos A. Ouzounis
Genome Informatics 19: 131-141 (2007)
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Weighted Lasso in Graphical Gaussian Modeling for Large Gene Network Estimation Based on Microarray Data
Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, Satoru Miyano
Genome Informatics 19: 142-153 (2007)
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GO Based Tissue Specific Functions of Mouse using Countable Gene Expression Profiles
Yoichi Takenaka, Akiko Matsumoto, Hideo Matsuda
Genome Informatics 19: 154-165 (2007)
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Functional Centrality: Detecting Lethality of Proteins in Protein Interaction Networks
Kar Leong Tew, Xiao-Li Li, Soon-Heng Tan
Genome Informatics 19: 166-177 (2007)
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The in silico Prediction of Promoters in Bacterial Genomes
Michael Towsey, James M. Hogan, Sarah Mathews, Peter Timms
Genome Informatics 19: 178-189 (2007)
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Keynote Addresses

Discovering Biomolecular Mechanisms with Protein Sequence Studies
Frank Eisenhaber
Genome Informatics 19: 193-193 (2007)
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The p53 Pathway
David Lane
Genome Informatics 19: 194-194 (2007)
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Regulation of Gene Expression by Small Non-Coding RNAs
Hanah Margalit
Genome Informatics 19: 195-195 (2007)
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Mapping the Transcriptional Network in Stem Cells Regulated by REST
Lawrence W. Stanton
Genome Informatics 19: 196-196 (2007)
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Computational Dissection of Mammalian Regulation Networks
MichaeL Zhang
Genome Informatics 19: 197-197 (2007)
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