GIW / InCoB 2015 at MIRAIKAN, Odaiba, Tokyo, Japan |
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Venue |
National Museum of Emerging Science and Innovation (Miraikan) |
AIST Annex |
Room |
Miraikan Hall |
Conference Room 2 |
Conference Room 1 |
Innovation Hall |
11F |
Capacity |
300 |
84 |
56 |
103 |
250 |
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Day 1 Wednesday, September 9, 2015 |
8:00 – 8:30 |
Site Preparation
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No Conference Activity at AIST Annex |
8:30 – 17:00 |
Registration Desk Open
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8:45 – 9:00 |
Opening Remarks |
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9:00 – 10:00 |
Keynote: Arne Elofsson What is missing from a complete structural map of the cell? |
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10:00 – 10:20 |
Day 1, Morning ☕ Coffee Break ☕ |
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Spectral Processing / Transcription Factor Pairs Shoba Ranganathan |
Software Demos Toutai Mituyama |
High Dimensional Data / Feature Selection Tsuda Koji |
10:20 – 10:40 |
J73 Xuetao Wang Preprocess and condensation of Raman spectrum for single-cell phenotype analysis |
D121 Tyler Weirick C-It-Loci: A knowledge database for tissue-enriched loci |
J23 Tomokazu Konishi Principal component analysis for designed experiments |
10:40 – 11:00 |
J62 Chalini Wijetunge A new peak detection algorithm for MALDI mass spectrometry data based on a modified Asymmetric Pseudo-Voigt model |
D122 David John RNAeditor: a bioinformatics tool to analyze RNA editing events |
J02 Y-H. Taguchi Identification of aberrant gene expression associated with aberrant promoter methylation in primordial germ cells between E13 and E16 rat F3 generation vinclozolin linea |
11:00 – 11:20 |
J16 Wei-Sheng Wu Functional redundancy of transcription factors explains why most binding targets of a transcription factor are not affected when the transcription factor is knocked out |
D128 Eric Bonnet NaviCell technology and Atlas of Cancer Signaling Network: a systems biology resource for integrative analysis of cancer data |
J17 Ping Zhang An Adaptive Genetic Algorithm for Selection of Blood-based Biomarkers for Prediction of Alzheimer's Disease Progression |
11:20 – 11:40 |
J6+19 Wei-Sheng Wu Computational Identification of Cooperative Transcription Factor Pairs in Yeast: A newly developed algorithm and web tool for performance evaluation |
D155 Srinath Sridharan Health on the go: mobile health analytics apps in the modern technological era |
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11:40 – 12:55 |
Offsite Lunch (You must fend for yourself; there are many restaurants and indoor food stalls within walking distance) |
12:55 – 13:00 |
Announcements |
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13:00 – 14:00 |
Keynote: Mark Baker The Human Proteome Project’s Efforts to Find the “Missing Proteins” and Develop a Common Informatics Language |
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14:00 – 14:20 |
Day 1, Afternoon ☕ Coffee Break ☕ |
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Chemical Informatics Paul Horton |
Genomics & NGS Siu Ming Yiu |
Pathway and Gene Association Anton Kratz |
Bioconductor Matt Ritchie |
14:20 – 14:50 |
T2 Kenta Oono Preferred Networks Recent Development of Deep Learning Technology and its Application to Quantitative Structure-Activity Relationship |
J77 Chee Keong Kwoh ARG-walker Inference of Individual Specific Strengths of Meiotic Recombination Hotspots by Population Genomics Analysis |
J60 Ruth Stoney Disentangling the multigenic and pleiotropic nature of molecular function |
S1a Martin Morgan An overview of genomic data analysis in Bioconductor |
14:50 – 15:20 |
J47 Zhanzhan Cheng Effectively identifying compound-protein interactions by learning from positive and unlabeled examples |
H105 Martin Frith Split-alignment of genomes finds orthologies more accurately |
J93 Adam Handen LENS: Web-based Lens for Enrichment and Network Studies of Human Proteins |
S1b Peter Hickey Analysing DNA methylation data with Bioconductor |
15:20 – 15:50 |
J64 Yung-Hao Wong Cocktail Multiple Drug Targets Design by Attacking on the Core Network Markers of Four Cancers with Ligand-Based and Structure-Based Virtual Screening Methods |
J40 Zhen Zhang Sprites: detection of deletions from low-coverage sequencing data by re-aligning split reads |
J05 Chia-Chun Chiu YAGM: a web tool for mining associated genes in yeast based on diverse biological association |
S1c Charity Law & Matthew Ritchie RNA-seq analysis in Bioconductor |
15:50 – 16:20 |
J88 Kana Shimizu Privacy-preserving search for chemical compound databases |
J46 Kouichi Kimura Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data |
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S1d Jianmiao Chen Cytofkit: a mass cytometry data analysis toolkit for mapping cellular heterogeneity and progression |
AIST Annex Open for Poster Put-up |
16:20 – 16:30 |
Delegates move from MIRAIKAN to AIST Annex 11F --------------------> |
16:30 – 17:30 |
MIRAIKAN Venue Closed
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Odd Numbered Posters @ AIST Annex 11 Floor (Odd posters may be taken down at the end) |
17:30 |
AIST Annex Venue Closed
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Day 2 Thursday, September 10, 2015 |
8:00 – 8:30 |
Site Preparation
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No Conference Activity at AIST Annex |
8:30 – 17:00 |
Registration Desk Open
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8:55 – 9:00 |
Announcements |
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9:00 – 10:00 |
Keynote: Edward Marcotte Evolution, the Proteome & Human Disease |
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10:00 – 10:20 |
Day 2, Morning ☕ Coffee Break ☕ |
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Protein Classification Kentaro Tomii |
Virus Classification & Metagenomics Ugur Sezerman |
Assorted Topics Limsoon Wong |
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10:20 – 10:40 |
J63 Qingyao Wu Markov chain based semi-supervised Multi-instance Multi-labeled method for protein function prediction |
J09 Tsunglin Liu Obtaining long 16S rDNA sequences using multiple primers and its application on dioxin-containing samples |
J38 Takeyuki Tamura Computing Minimum Reaction Modifications in a Boolean Metabolic Network |
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10:40 – 11:00 |
J85 Hiroto Saigo Improved Classification of Nuclear Receptors with Random Forest |
J74 Chieh-Hua Lin Precise Genotyping and Recombination Detection of Enterovirus |
J22 Che-Wei Chang Light-RCV: a lightweight read coverage viewer for next generation sequencing data |
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11:00 – 11:20 |
J69 Nam-Ninh Nguyen EnzDP: improved enzyme annotation for metabolic network reconstruction based on domain composition profiles |
J95 Muhammad Farhan Sjaugi g-FLUA2H: A web-based application to study the dynamics of animal-to-human mutation transmission for influenza viruses |
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11:20 – 11:40 |
J59 Yi-Fan Liou SCMMTP: Identifying and characterizing membrane transport proteins using propensity scores of dipeptides |
J27 Saman K. Halgamuge Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness |
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11:40 – 12:55 |
Offsite Lunch (You must fend for yourself; there are many restaurants and indoor food stalls within walking distance) |
12:55 – 13:00 |
Announcements |
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13:00 – 14:00 |
ISCB Keynote: Yana Bromberg Interpreting Genomic Data to Inform Pathogenesis Pathways |
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14:00 – 14:20 |
Day 2, Afternoon ☕ Coffee Break ☕ |
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Cancer I Christian Schönbach |
Epitope Asif Khan |
Protein-{Protein,RNA,DNA} Interface Yasubumi Sakakibara |
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14:20 – 14:50 |
J86 Karen Ryall An integrated bioinformatics analysis to dissect kinase dependency in triple negative breast cancer |
J03 Vladimir Brusic A computational method for identification of viral vaccine targets from protein regions of conserved HLA binding |
J32 Kengo Sato A max-margin model for predicting residue-base contacts in protein-RNA interactions |
14:50 – 15:20 |
H142 Inna Kuperstein Finding metastasis inducers in colon cancer through network analysis: concomitant Notch activation and p53 deletion trigger the process |
J04 Vladimir Brusic A systematic analysis of a broadly neutralizing antibody AR3C epitopes on Hepatitis C virus E2 envelope glycoprotein and their cross-reactivity |
J26 Shoba Ranganathan Discrete structural features among interface residue-level classes |
15:20 – 15:50 |
J25 Ugur Sezerman A novel analysis strategy for integrating methylation and expression data reveals core pathways for thyroid cancer aetiology |
J66 Ming-Ju Tsai Prediction of linear B-cell epitopes of hepatitis C virus for vaccine development |
J81 Yi-Fan Liou Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes |
15:50 – 16:20 |
H132 Emmanuel Barillot Disentangling bladder cancer progression pathways by pan-cancer deconvolution of tumoral transcriptomes |
J48 Jing Ren Positive-unlabeled learning for the prediction of conformational B-cell epitopes |
J84 Shayoni Dutta A theoretical investigation of DNA dynamics and desolvation kinetics for zinc finger protein Zif268 |
AIST Annex Open for Even Number Poster Put-up |
16:20 – 16:30 |
Delegates move from MIRAIKAN to AIST Annex 11F --------------------> |
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16:30 – 17:30 |
MIRAIKAN 7th Floor Venue Closed |
Even Numbered Posters @ AIST Annex 11 Floor (Please take all posters down at the end) |
17:30 – 18:00 |
<-------------------- Delegates move from AIST Annex back to Miraikan 1F |
18:00 – 19:45 |
Banquet @ Miraikan 1st Floor Under the Globe! |
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20:00 |
Venue Closed
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Day 3 Friday, September 11, 2015 |
8:00 – 8:30 |
Site Preparation
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No Conference Activity at AIST Annex |
8:30 – 17:00 |
Registration Desk Open
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8:55 – 9:00 |
Annoucements |
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9:00 – 10:00 |
Keynote: Gil Ast Chromatin organization, epigenetics and alternative splicing |
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10:00 – 10:20 |
Day 3, Morning ☕ Coffee Break ☕ |
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miRNA & other topics Hideo Matsuda |
Protein Sequence analysis Kenta Nakai |
Image Processing Akihiko Konagaya |
NGS Paoyang Chen |
10:20 – 10:50 |
H136 Christophe Lefèvre The short message in milk; secretory miRNA in marsupial milk |
T1 Kentaro Tomii AIST Bioinformatics tools for protein sequence/structure analysis in high-throughput biology |
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S2a Yu-Jung Chang CloudDOE: A User-Friendly Tool for Speeding up Hadoop Cloud Deployment and Genomic Data Analysis Using MapReduce |
10:50 – 11:20 |
J80 Chia-Chun Chiu Investigation of microRNAs in mouse macrophage responses to lipoposaccharide-stimulation by combining gene expression with microRNA-target information |
J41 Ahmet Sinan Yavuz Prediction of neddylation sites from protein sequences and sequence-derived properties |
J53 Osamu Hirose SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter |
S2b Shu-Hwa Chen Multi-Omics Online Analysis System (MOLAS) |
11:20 – 11:50 |
J37 Etienne Birmele A model for gene deregulation detection using expression data |
J75 Hui-Ju Kao A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs |
J82 Saowaluck Kaewkamnerd Automatic Genotyping from DNA Gel Electrophoresis Images using Bio-image Processing Technique |
S2c Pao-Yang Chen The Investigation of Genome wide DNA Methylation |
11:50 – 12:20 |
H151 Yana Bromberg Functional basis of microorganism classification |
T3 Bruno Gaeta ISCB International Society for Computational Biology (ISCB) - Invest in You, Your Research Field: An Open Forum to Learn More about ISCB and Its Programs |
J28 Lee Kien Leow Automated identification of copepods using digital image processing and artificial neural network |
S2d Jui-Hung Hung Studying RNA processing of small silencing RNAs by NGS |
12:20 – 13:00 |
APBioNet General Meeting with lunchboxes provided |
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Cancer II Vladimir Brusic |
DNA methylation, NGS Martin Frith |
Dynamic Network Inference Jun Sese |
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13:00 – 13:30 |
H141 Steve Rozen Mutation signatures implicate aristolochic acid in bladder cancer development |
J65 Yutaka Saito Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions |
H150 Kentaro Inoue Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-κB activation |
13:30 – 14:00 |
H129 Inna Kuperstein Atlas of Cancer Signaling Network: a systems biology research for integrative analysis of cancer data with Google Maps |
J55 Jonghun Lee An Integrative Approach for Efficient Analysis of Whole Genome Bisulfite Sequencing Data |
J76 Yung-Hao Wong Identification of network-based biomarkers of cardioembolic stroke using a systems biology approach with time series data |
14:00 – 14:30 |
H138 Grace Shieh CSNK1E/CTNNB1 Are Synthetic Lethal to TP53 in Colorectal Cancer and are Markers for Prognosis |
J70 Ming-Ren Yen MethGO: a comprehensive tool for analyzing whole genome bisulfite sequencing data |
J52 Renhua Song Inference of gene interaction networks using conserved subsequential patterns from multiple time course gene expression datasets |
14:30 – 15:00 |
J51 Jean-Marc Schwartz Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events |
J90 Yu-Jung Chang Subset Selection of High-Depth Next Generation Sequencing Reads for De Novo Genome Assembly Using MapReduce Framework |
J13 Yoichi Takenaka Detecting the shifts of gene regulatory networks during time-course experiments with a single time point temporal resolution |
15:00 – 15:20 |
Day 3, Afternoon ☕ Coffee Break ☕ |
15:20 – 16:20 |
Keynote: Annie De Groot A Computational Pipeline for Personalized Cancer Vaccines On Demand: Yes we Can! |
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16:20 – 16:40 |
Awards, InCoB 2016 & GIW 2016 Announcement, Closing Remarks |
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16:45 |
Venue Closed |