Detection and Restoration of Hybridization Problems in Affymetrix GeneChip Data by Parametric Scanning
Fig. 2 Stability in the standards
Fig. 3 Differences from the standard on the cell basis
Fig. 4 Differences from the standard on the window basis
Fig. 5 Effects on the reproducibility of experiments
Fig. 8 Insensitivity to the expectation values
Cancelled cells/genes and effects on reproducibility in repeated experiments.
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The R function for to start analyses
The R function for Parametric Scanning
The R function for to check the assumptions
The expectation for the sigma parameter of the median of 25 normalized cells' data
and the R function for reproducing purpose.
The article is available from the Internet at Genome Informatics Online or SuperNORM.