Day 1 at a glance(presenter only) | details | Day 2 at a glance(presenter only) | details |
Day 3 at a glance(presenter only) | details | | Download whole program (PDF – updated on December 2nd) 
P: Proceedings Track HL: Highlight Track T: Technology Track S: Special Track
Last update : Dec. 2, 2014
Day 1 – Monday, December 15 – at a glance (presenter only)
| 8:15 – 19:00 |
Registration desk open |
|
3F Auditorium |
3F Media hall |
4F Meeting room1 |
| 8:45 – 9:00 |
Opening remarks |
|
|
| 9:00 – 10:00 |
Keynote speech 1 |
|
|
| Masami Yokota HIRAI Understanding of plant metabolism via metabolomics-based mathematical modeling |
| 10:15 – 11:15 |
Session 1.1A |
Session 1.1B |
Session 1.1C |
| 10:15 – 10:45 |
P31 Kansuporn Sriyudthsak |
P87 Broto Chakrabarty |
P92 Tien-Hao Chang |
| 10:45 – 11:15 |
P06 Kazuhiro Maeda |
P19 Paul Yoo |
P15 Wei-Sheng Wu |
| 11:15 – 13:00 |
Lunch at various restaurants in walk distance of venue.
AASBi Board Meeting at the meeting room 4 on the 4th floor. |
| 13:00 – 14:00 |
Keynote speech 2 |
|
|
| Thomas LENGAUER Custom-tailoring combination drug therapies with bioinformatics |
| 14:15 – 16:15 |
Session 1.2A |
Session 1.2B |
Session 1.2C |
| 14:15 – 14:45 |
P05 Junhee Seok |
P90 Yi-Yu Hsu |
P69 Ryota Mori |
| 14:45 – 15:15 |
P30 Naoki Nariai |
P88 Jiajie Peng |
P12 Alberto Pascual-Montano |
| 15:15 – 15:45 |
HL116 Hideya Kawaji |
P22 Masaaki Kotera |
T6 SGI – James Reaney |
| 15:45 – 16:15 |
TBA |
P81 Jiun-Huang Ju |
|
| 16:15 – 16:40 |
Coffee Break |
| 16:40 – 17:40 |
Poster session 1 |
| 17:40 – 18:40 |
ISCB open business meeting |
|
|
| 19:00 |
Venue closed |
Day 2 – Tuesday, December 16 – at a glance (presenter only)
| 8:10 – 18:00 |
Registration desk open |
|
3F Auditorium |
3F Media hall |
4F Meeting room1 |
| 8:30 – 9:30 |
Keynote speech 3 |
|
|
| Limsoon WONG Delivering a quantum leap in the reproducibility, precision, and sensitivity of gene-expression-profile analysis even when sample size is extremely small. |
| 9:45 – 11:15 |
Session 2.1A |
Session 2.1B |
Session 2.1C |
| 9:45 – 10:15 |
P82 Chih-Yuan Hsu |
P76 Dan He |
S1 Asif M. Khan |
| 10:15 – 10:45 |
HL108 Eudes Barbosa |
P09 Wenbao Yu |
S2 Christian Schönbach |
| 10:45 – 11:15 |
P94 Michal Wozniak |
P86 Alexandros Manolakos |
T5 SciEngines |
| 11:15 – 13:00 |
Lunch at various restaurants in walk distance of venue |
| 13:00 – 14:00 |
Keynote speech 4 |
|
|
| Janet KELSO What we have learned from sequencing archaic human genomes |
| 14:15 – 16:15 |
Session 2.2A |
Session 2.2B |
Session 2.2C |
| 14:15 – 14:45 |
HL106 Rajeev Azad |
P56 Yutaka Ueno |
P51 Bingqing Lin, et al. |
| 14:45 – 15:15 |
P18 Chien-Ming Chen |
P67 So Kobiki |
P39 Hiroyuki Kuwahara |
| 15:15 – 15:45 |
P66 Junho Kim |
P29 Chern Han Yong |
P71 Bartek Wilczynski |
| 15:45 – 16:15 |
P21 Xinghua Lu |
T3 Level Five – Nozomi Nagano |
|
| 16:15 – 16:40 |
Coffee break |
| 16:40 – 17:40 |
Poster session 2 |
| 18:00 |
Venue closed |
| 18:30 – 20:00 |
Conference dinner at GRAND PACIFIC LE DAIBA |
Day 3 – Wednesday, December 17 – at a glance (presenter only)
| 8:15 – 18:00 |
Registration desk open |
|
3F Auditorium |
3F Media hall |
4F Meeting room1 |
| 9:00 – 10:00 |
Keynote speech 5 |
|
|
| Shinya KURODA Temporal coding of insulin action |
| 10:15 – 12:15 |
Session 3.1A |
Session 3.1B |
|
| 10:15 – 10:45 |
P58 Che Lin |
HL111 Yosvany López |
|
| 10:45 – 11:15 |
P23 Alexis Vandenbon |
P70 Junfang Chen |
|
| 11:15 – 11:45 |
HL109 Yoshihiko Hasegawa |
HL115 Yutaka Saito |
|
| 11:45 – 12:15 |
HL105 Ashwini Patil |
T4 Life Technologies Japan Ltd. |
|
| 12:15 – 13:30 |
Lunch at venue |
| 13:30 – 15:30 |
Session 3.2A |
Session 3.2B |
|
| 13:30 – 14:00 |
T7 SGI – James Reaney |
P55 Kunihiko Sadakane |
|
| 14:00 – 14:30 |
HL107 Yana Bromberg, et al. |
P77 Kyu-Baek Hwang |
|
| 14:30 – 15:00 |
TBA |
P91 Christina Boucher |
|
| 15:00 – 15:30 |
T2 AIST – Jun Sese |
P34 Idoia Ochoa |
|
| 15:30 – 16:00 |
Coffee Break |
| 16:00 – 17:00 |
Keynote speech 6 |
|
|
| Alfonso VALENCIA Cancer Genomics and Computational Biology |
| 17:00 – 17:30 |
Award ceremony and closing remarks |
|
|
| 18:00 |
Venue closed |
P: Proceedings Track HL: Highlight Track T: Technology Track S: Special Track
Last update : Dec. 2, 2014
DAY 1
| Session 1.1A | 10:15 – 11:15, Day 1, 3F Auditorium |
| P31 U–system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Ebernard O. Voit, Fumihide Shiraishi and Masami Yokota Hirai. ◆Abstract |
| P06 Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity. Kazuhiro Maeda and Hiroyuki Kurata. ◆Abstract |
| Session 1.1B | 10:15 – 11:15, Day 1, 3F Media hall |
| P87 PRIGSA: Protein Repeat Identification by Graph Spectral Analysis. Broto Chakrabarty and Nita Parekh. ◆Abstract |
| P19 Randomized Subspace Learning for Proline Cis-Trans Isomerization Prediction. Kamal Taha, Paul Yoo and Sami Muhaidat. ◆Abstract |
| Session 1.1C | 10:15 – 11:15, Day 1, 4F Meeting room1 |
| P92 A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh and Tien-Hao Chang. ◆Abstract |
| P15 Identifying cooperative transcription factors in yeast using multiple data sources. Wei-Sheng Wu, Mei-Huei Jhu and Fu-Jou Lai. ◆Abstract |
| Session 1.2A | 14:15 – 16:15, Day 1, 3F Auditorium |
| P05 RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays. Junhee Seok, Weihong Xu, Ronald Davis and Wenzhong Xiao. ◆Abstract |
| P30 TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads. Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata and Masao Nagasaki. ◆Abstract |
| HL116 Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing. Hideya Kawaji, Marina Lizio, Masayoshi Itoh, Mutsumi Kanamori-Katayama, Ai Kaiho, Hiromi Nishiyori-Sueki, Jay W. Shin, Miki Kojima-Ishiyama, Mitsuoki Kawano, Mitsuyoshi Murata, Noriko Ninomiya-Fukuda, Sachi Ishikawa-Kato, Sayaka Nagao-Sato, Shohei Noma, Yoshihide Hayashizaki, Alistair R.R. Forrest and Piero Carninci. ◆Abstract |
| T1(cancelled) How to sequence a small country. Sidra Medical and Research Centre – Andrey Ptitsyn. ◆Abstract |
| Session 1.2B | 14:15 – 16:15, Day 1, 3F Media hall |
| P90 Curatable Named-entity Recognition using Semantic Relations. Yi-Yu Hsu and Hung-Yu Kao. ◆Abstract |
| P88 An Integrative Approach for Measuring Semantic Similarities using Gene Ontology. Jiajie Peng, Hongxiang Li, Qinghua Jiang, Yadong Wang and Jin Chen. ◆Abstract |
| P22 PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB Enzyme List. Masaaki Kotera, Yosuke Nishimura, Zen-Ichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa and Susumu Goto. ◆Abstract |
| P81 Discovering novel protein-protein interactions by measuring the protein semantic similarity from biomedical literature. Jung-Hsien Chiang and Jiun-Huang Ju. ◆Abstract |
| Session 1.2C | 14:15 – 16:15, Day 1, 4F Meeting room1 |
| P69 Efficient calculation of exact probability distributions of integer features on RNA secondary structures. Ryota Mori, Michiaki Hamada and Kiyoshi Asai. ◆Abstract |
| P12 Improving miRNA-mRNA Interaction Predictions. Daniel Tabas-Madrid, Ander Muniategui, Ignacio Sánchez-Caballero, Dannys Martinez-Herrera, Carlos Oscar S. Sorzano, Angel Rubio and Alberto Pascual-Montano. ◆Abstract |
| T6 Data-driven Science: SGI for Genomics Analysis. SGI – James Reaney. |
DAY 2
| Session 2.1A | 9:45 – 11:15, Day 2, 3F Auditorium |
| P82 Systematic Approach to Escherichia coli Cell Population Control using a Genetic Lysis Circuit. Chih-Yuan Hsu, Tsu-Chun Yu, Ling-Jiun Lin, Rei-Hsing Hu and Bor-Sen Chen. ◆Abstract |
| HL108 On the limits of computational functional genomics for bacterial lifestyle prediction. Eudes Barbosa, Richard Rottger, Anne-Christin Hauschild, Vasco Azevedo and Jan Baumbach. ◆Abstract |
| P94 GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria. Michal Wozniak, Jerzy Tiuryn and Limsoon Wong. ◆Abstract |
| Session 2.1B | 9:45 – 11:15, Day 2, 3F Media hall |
| P76 IPED2X: A Robust Pedigree Reconstruction Algorithm for Complicated Pedigrees. Dan He and Eleazar Eskin. ◆Abstract |
| P09 AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data. Wenbao Yu and Taesung Park. ◆Abstract |
| P86 CaMoDi: A new method for fast Cancer Module Discovery. Alexandros Manolakos, Idoia Ochoa, Kartik Venkat, Andrea Goldsmth and Olivier Gevaert. ◆Abstract |
| Session 2.1C | 9:45 – 11:15, Day 2, 4F Meeting room1 |
| S1 Getting involved! Activities of APBioNet. Asif M. Khan, Tin Wee Tan, Christian Schönbach and Shoba Ranganathan. ◆Abstract |
| S2 Bioinformatics opportunities in Central Asia. Christian Schönbach, Asif M. Khan, Tin Wee Tan and Shoba Ranganathan. ◆Abstract |
| T5 An ABC (Accelerated Bio Computation), using the FPGA based massively parallel architecture RIVYERA. SciEngines. ◆Abstract |
| Session 2.2A | 14:15 – 16:15, Day 2, 3F Auditorium |
HL106 Detecting Evolutionary Strata on the Human X Chromosome in the Absence of Gametologous Y-Linked Sequences.
Rajeev Azad, Ravi Shanker Pandey and Melissa Wilson Sayres. ◆Abstract |
| P18 Identification of conserved and polymorphic STRs for personal genomes. Chien-Ming Chen, Chi-Pong Sio, Yu-Lun Lu, Hao-Teng Chang, Chin-Hwa Hu and Tun-Wen Pai. ◆Abstract |
| P66 SoloDel: A probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data. Junho Kim, Sanghyeon Kim, Hojung Nam, Sangwoo Kim and Doheon Lee. ◆Abstract |
| P21 Trans-species learning of cellular signaling systems with bimodal deep belief networks. Lujia Chen, Chunhui Cai, Vicky Chen and Xinghua Lu. ◆Abstract |
| Session 2.2B | 14:15 – 16:15, Day 2, 3F Media hall |
| P56 Implementing a modeling software for animated protein-complex interactions using a physics simulation library. Yutaka Ueno, Shuntaro Ito and Akihiko Konagaya. ◆Abstract |
| P67 ReSAPP: Predicting overlapping protein complexes by merging multiple sampled partitions of proteins. So Kobiki and Osamu Maruyama. ◆Abstract |
| P29 Discovery of Small Protein Complexes from PPI Networks. Chern Han Yong, Osamu Maruyama and Limsoon Wong. ◆Abstract |
| T3 Biological databases and modern computer science: Toxygates and EzCatDB. LEVEL FIVE – Nozomi Nagano, Johan Nyström-Persson, Kazuyoshi Ikeda, Yoshinobu Igarashi, Kenji Mizuguchi, Kentaro Tomii and Shinichi Honiden. ◆Abstract |
| Session 2.2C | 14:15 – 16:15, Day 2, 4F Meeting room1 |
| P51 LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data. Bingqing Lin, Li-Feng Zhang and Xin Chen. ◆Abstract |
| P39 Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels. Xiaolei Wang, Hiroyuki Kuwahara and Xin Gao. ◆Abstract |
| P71 Supervised learning method for predicting chromatin boundary associated insulator elements. Pawel Badnarz and Bartek Wilczynski. ◆Abstract |
DAY 3
| Session 3.1A | 10:15 – 12:15, Day 3, 3F Auditorium |
| P58 Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection. Che Lin, Chin-Nan Lin, Yu-Chao Wang, Fang-Yu Liu, Yu-Wen Chien, Yung-Jun Chuang, Chung-Yu Lan, Wen-Ping Hsieh and Bor-Sen Chen. ◆Abstract |
| P23 Dynamics of enhancers in myeloid antigen presenting cells upon LPS stimulation. Alexis Vandenbon, Shunsuke Teraguchi, Osamu Takeuchi, Yutaka Suzuki and Daron Standley. ◆Abstract |
| HL109 Optimal Implementations for Reliable Circadian Clocks. Yoshihiko Hasegawa and Masanori Arita. ◆Abstract |
| HL105 Identifying active gene sub-networks from time-course gene expression profiles using TimeXNet. Ashwini Patil and Kenta Nakai. ◆Abstract |
| Session 3.1B | 10:15 – 12:15, Day 3, 3F Media hall |
| HL111 A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna- Expressed Genes in Drosophila melanogaster. Yosvany López, Alexis Vandenbon and Kenta Nakai. ◆Abstract |
| P70 AKSmooth: Human colon methylome profiling using low-coverage bisulfite sequencing data. Junfang Chen, Pavlo Lutsik, Ruslan Akulenko, Jörn Walter and Volkhard Helms. ◆Abstract |
| HL115 Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions. Yutaka Saito, Junko Tsuji and Toutai Mituyama. ◆Abstract |
| T4 Ion Reporter™ – Local & Cloud based NGS Data Analysis Solution for Ion Torrent™. Life Technologies Japan Ltd. ◆Abstract |
| Session 3.2A – 13:30 – 15:30, Day 3, 3F Auditorium |
| T7 Data-driven Science: SGI for Genomics Analysis. SGI – James Reaney. |
| HL107 The last straw did not break the camel’s back: searching for causative variants of polygenic disease disregards individual predisposing genomic differences. Yana Bromberg, Peter Kahn and Burkhard Rost. ◆Abstract |
| TBA |
| T2 On bringing genome informatics innovation to life science industry in Odaiba. AIST – Jun Sese ◆Abstract |
| Session 3.2B – 13:30 – 15:30, Day 3, 3F Media hall |
| P55 An O(m log m)-time algorithm for detecting superbubbles. Wing-Kin Sung, Kunihiko Sadakane, Tetsuo Shibuya, Abha Belorkar and Iana Pyrogova. ◆Abstract |
| P77 An Efficient Search Algorithm for Finding Genomic-range Overlaps Based on the Maximum Range Length. Ho-Sik Seok, Taemin Song, Sek Won Kong and Kyu-Baek Hwang. ◆Abstract |
| P91 HyDA-Vista: Towards Optimal Guided Selection of k-mer Size for Sequence Assembly. Seyed Basir Shariat Razavi, Narjes Sadat Movahedi Tabrizi, Hamidreza Chitsaz and Christina Boucher. ◆Abstract |
| P34 Aligned Genomic Data Compression via Improved Modeling. Idoia Ochoa, Mikel Hernaez and Tsachy Weissman. ◆Abstract |
P: Proceedings Track HL: Highlight Track T: Technology Track S: Special Track
Last update : Dec. 2, 2014
Conference Dinner – Banquet
It is included in your registration. Individual dinner ticket for your family is available on the day. Do not hesitate to take your partner to the dinner. Contact us for details.
